Mercurial > repos > pjbriggs > rnachipintegrator

comparison tool_dependencies.xml @ 0:0abe6bac47a6 draft

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planemo upload for repository https://github.com/fls-bioinformatics-core/galaxy-tools/tree/master/rnachipintegrator commit 97d556dae96db5457590a3a257392b6e4093a912-dirty
author pjbriggs
date Wed, 24 Feb 2016 09:25:18 -0500
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children d37526cd12aa
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-1:000000000000 0:0abe6bac47a6
1 <?xml version="1.0"?>
2 <tool_dependency>
3 <package name="python_xlsxwriter" version="0.8.4">
4 <install version="1.0">
5 <actions>
6 <action type="download_by_url">https://pypi.python.org/packages/source/X/XlsxWriter/XlsxWriter-0.8.4.tar.gz</action>
7 <action type="make_directory">$INSTALL_DIR/lib/python</action>
8 <action type="shell_command">
9 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp;
10 python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin
11 </action>
12 <action type="set_environment">
13 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
14 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
15 </action>
16 </actions>
17 </install>
18 <readme>Installs Python module XlsxWriter 0.8.4</readme>
19 </package>
20 <package name="rnachipintegrator" version="1.0.0">
21 <install version="1.0">
22 <actions>
23 <action type="download_by_url">https://pypi.python.org/packages/source/R/RnaChipIntegrator/RnaChipIntegrator-1.0.0.tar.gz</action>
24 <action type="shell_command">
25 pip install --no-use-wheel --install-option "--prefix=$INSTALL_DIR" .
26 </action>
27 <action type="set_environment">
28 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
29 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python2.7/site-packages</environment_variable>
30 </action>
31 </actions>
32 </install>
33 <readme>Installs RnaChipIntegrator 1.0.0 from PyPI</readme>
34 </package>
35 </tool_dependency>