Mercurial > repos > pjbriggs > rnachipintegrator

annotate test.tool_dependencies.rnachipintegrator/xlsxwriter/0.8.4/lib/python/site.py @ 0:0abe6bac47a6 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/fls-bioinformatics-core/galaxy-tools/tree/master/rnachipintegrator commit 97d556dae96db5457590a3a257392b6e4093a912-dirty
author pjbriggs
date Wed, 24 Feb 2016 09:25:18 -0500
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
0abe6bac47a6 planemo upload for repository https://github.com/fls-bioinformatics-core/galaxy-tools/tree/master/rnachipintegrator commit 97d556dae96db5457590a3a257392b6e4093a912-dirty
pjbriggs
parents:
diff changeset
1 def __boot():
0abe6bac47a6 planemo upload for repository https://github.com/fls-bioinformatics-core/galaxy-tools/tree/master/rnachipintegrator commit 97d556dae96db5457590a3a257392b6e4093a912-dirty
pjbriggs
parents:
diff changeset
2 import sys
0abe6bac47a6 planemo upload for repository https://github.com/fls-bioinformatics-core/galaxy-tools/tree/master/rnachipintegrator commit 97d556dae96db5457590a3a257392b6e4093a912-dirty
pjbriggs
parents:
diff changeset
3 import os
0abe6bac47a6 planemo upload for repository https://github.com/fls-bioinformatics-core/galaxy-tools/tree/master/rnachipintegrator commit 97d556dae96db5457590a3a257392b6e4093a912-dirty
pjbriggs
parents:
diff changeset
4 PYTHONPATH = os.environ.get('PYTHONPATH')
0abe6bac47a6 planemo upload for repository https://github.com/fls-bioinformatics-core/galaxy-tools/tree/master/rnachipintegrator commit 97d556dae96db5457590a3a257392b6e4093a912-dirty
pjbriggs
parents:
diff changeset
5 if PYTHONPATH is None or (sys.platform=='win32' and not PYTHONPATH):
0abe6bac47a6 planemo upload for repository https://github.com/fls-bioinformatics-core/galaxy-tools/tree/master/rnachipintegrator commit 97d556dae96db5457590a3a257392b6e4093a912-dirty
pjbriggs
parents:
diff changeset
6 PYTHONPATH = []
0abe6bac47a6 planemo upload for repository https://github.com/fls-bioinformatics-core/galaxy-tools/tree/master/rnachipintegrator commit 97d556dae96db5457590a3a257392b6e4093a912-dirty
pjbriggs
parents:
diff changeset
7 else:
0abe6bac47a6 planemo upload for repository https://github.com/fls-bioinformatics-core/galaxy-tools/tree/master/rnachipintegrator commit 97d556dae96db5457590a3a257392b6e4093a912-dirty
pjbriggs
parents:
diff changeset
8 PYTHONPATH = PYTHONPATH.split(os.pathsep)
0abe6bac47a6 planemo upload for repository https://github.com/fls-bioinformatics-core/galaxy-tools/tree/master/rnachipintegrator commit 97d556dae96db5457590a3a257392b6e4093a912-dirty
pjbriggs
parents:
diff changeset
9
0abe6bac47a6 planemo upload for repository https://github.com/fls-bioinformatics-core/galaxy-tools/tree/master/rnachipintegrator commit 97d556dae96db5457590a3a257392b6e4093a912-dirty
pjbriggs
parents:
diff changeset
10 pic = getattr(sys,'path_importer_cache',{})
0abe6bac47a6 planemo upload for repository https://github.com/fls-bioinformatics-core/galaxy-tools/tree/master/rnachipintegrator commit 97d556dae96db5457590a3a257392b6e4093a912-dirty
pjbriggs
parents:
diff changeset
11 stdpath = sys.path[len(PYTHONPATH):]
0abe6bac47a6 planemo upload for repository https://github.com/fls-bioinformatics-core/galaxy-tools/tree/master/rnachipintegrator commit 97d556dae96db5457590a3a257392b6e4093a912-dirty
pjbriggs
parents:
diff changeset
12 mydir = os.path.dirname(__file__)
0abe6bac47a6 planemo upload for repository https://github.com/fls-bioinformatics-core/galaxy-tools/tree/master/rnachipintegrator commit 97d556dae96db5457590a3a257392b6e4093a912-dirty
pjbriggs
parents:
diff changeset
13 #print "searching",stdpath,sys.path
0abe6bac47a6 planemo upload for repository https://github.com/fls-bioinformatics-core/galaxy-tools/tree/master/rnachipintegrator commit 97d556dae96db5457590a3a257392b6e4093a912-dirty
pjbriggs
parents:
diff changeset
14
0abe6bac47a6 planemo upload for repository https://github.com/fls-bioinformatics-core/galaxy-tools/tree/master/rnachipintegrator commit 97d556dae96db5457590a3a257392b6e4093a912-dirty
pjbriggs
parents:
diff changeset
15 for item in stdpath:
0abe6bac47a6 planemo upload for repository https://github.com/fls-bioinformatics-core/galaxy-tools/tree/master/rnachipintegrator commit 97d556dae96db5457590a3a257392b6e4093a912-dirty
pjbriggs
parents:
diff changeset
16 if item==mydir or not item:
0abe6bac47a6 planemo upload for repository https://github.com/fls-bioinformatics-core/galaxy-tools/tree/master/rnachipintegrator commit 97d556dae96db5457590a3a257392b6e4093a912-dirty
pjbriggs
parents:
diff changeset
17 continue # skip if current dir. on Windows, or my own directory
0abe6bac47a6 planemo upload for repository https://github.com/fls-bioinformatics-core/galaxy-tools/tree/master/rnachipintegrator commit 97d556dae96db5457590a3a257392b6e4093a912-dirty
pjbriggs
parents:
diff changeset
18 importer = pic.get(item)
0abe6bac47a6 planemo upload for repository https://github.com/fls-bioinformatics-core/galaxy-tools/tree/master/rnachipintegrator commit 97d556dae96db5457590a3a257392b6e4093a912-dirty
pjbriggs
parents:
diff changeset
19 if importer is not None:
0abe6bac47a6 planemo upload for repository https://github.com/fls-bioinformatics-core/galaxy-tools/tree/master/rnachipintegrator commit 97d556dae96db5457590a3a257392b6e4093a912-dirty
pjbriggs
parents:
diff changeset
20 loader = importer.find_module('site')
0abe6bac47a6 planemo upload for repository https://github.com/fls-bioinformatics-core/galaxy-tools/tree/master/rnachipintegrator commit 97d556dae96db5457590a3a257392b6e4093a912-dirty
pjbriggs
parents:
diff changeset
21 if loader is not None:
0abe6bac47a6 planemo upload for repository https://github.com/fls-bioinformatics-core/galaxy-tools/tree/master/rnachipintegrator commit 97d556dae96db5457590a3a257392b6e4093a912-dirty
pjbriggs
parents:
diff changeset
22 # This should actually reload the current module
0abe6bac47a6 planemo upload for repository https://github.com/fls-bioinformatics-core/galaxy-tools/tree/master/rnachipintegrator commit 97d556dae96db5457590a3a257392b6e4093a912-dirty
pjbriggs
parents:
diff changeset
23 loader.load_module('site')
0abe6bac47a6 planemo upload for repository https://github.com/fls-bioinformatics-core/galaxy-tools/tree/master/rnachipintegrator commit 97d556dae96db5457590a3a257392b6e4093a912-dirty
pjbriggs
parents:
diff changeset
24 break
0abe6bac47a6 planemo upload for repository https://github.com/fls-bioinformatics-core/galaxy-tools/tree/master/rnachipintegrator commit 97d556dae96db5457590a3a257392b6e4093a912-dirty
pjbriggs
parents:
diff changeset
25 else:
0abe6bac47a6 planemo upload for repository https://github.com/fls-bioinformatics-core/galaxy-tools/tree/master/rnachipintegrator commit 97d556dae96db5457590a3a257392b6e4093a912-dirty
pjbriggs
parents:
diff changeset
26 try:
0abe6bac47a6 planemo upload for repository https://github.com/fls-bioinformatics-core/galaxy-tools/tree/master/rnachipintegrator commit 97d556dae96db5457590a3a257392b6e4093a912-dirty
pjbriggs
parents:
diff changeset
27 import imp # Avoid import loop in Python >= 3.3
0abe6bac47a6 planemo upload for repository https://github.com/fls-bioinformatics-core/galaxy-tools/tree/master/rnachipintegrator commit 97d556dae96db5457590a3a257392b6e4093a912-dirty
pjbriggs
parents:
diff changeset
28 stream, path, descr = imp.find_module('site',[item])
0abe6bac47a6 planemo upload for repository https://github.com/fls-bioinformatics-core/galaxy-tools/tree/master/rnachipintegrator commit 97d556dae96db5457590a3a257392b6e4093a912-dirty
pjbriggs
parents:
diff changeset
29 except ImportError:
0abe6bac47a6 planemo upload for repository https://github.com/fls-bioinformatics-core/galaxy-tools/tree/master/rnachipintegrator commit 97d556dae96db5457590a3a257392b6e4093a912-dirty
pjbriggs
parents:
diff changeset
30 continue
0abe6bac47a6 planemo upload for repository https://github.com/fls-bioinformatics-core/galaxy-tools/tree/master/rnachipintegrator commit 97d556dae96db5457590a3a257392b6e4093a912-dirty
pjbriggs
parents:
diff changeset
31 if stream is None:
0abe6bac47a6 planemo upload for repository https://github.com/fls-bioinformatics-core/galaxy-tools/tree/master/rnachipintegrator commit 97d556dae96db5457590a3a257392b6e4093a912-dirty
pjbriggs
parents:
diff changeset
32 continue
0abe6bac47a6 planemo upload for repository https://github.com/fls-bioinformatics-core/galaxy-tools/tree/master/rnachipintegrator commit 97d556dae96db5457590a3a257392b6e4093a912-dirty
pjbriggs
parents:
diff changeset
33 try:
0abe6bac47a6 planemo upload for repository https://github.com/fls-bioinformatics-core/galaxy-tools/tree/master/rnachipintegrator commit 97d556dae96db5457590a3a257392b6e4093a912-dirty
pjbriggs
parents:
diff changeset
34 # This should actually reload the current module
0abe6bac47a6 planemo upload for repository https://github.com/fls-bioinformatics-core/galaxy-tools/tree/master/rnachipintegrator commit 97d556dae96db5457590a3a257392b6e4093a912-dirty
pjbriggs
parents:
diff changeset
35 imp.load_module('site',stream,path,descr)
0abe6bac47a6 planemo upload for repository https://github.com/fls-bioinformatics-core/galaxy-tools/tree/master/rnachipintegrator commit 97d556dae96db5457590a3a257392b6e4093a912-dirty
pjbriggs
parents:
diff changeset
36 finally:
0abe6bac47a6 planemo upload for repository https://github.com/fls-bioinformatics-core/galaxy-tools/tree/master/rnachipintegrator commit 97d556dae96db5457590a3a257392b6e4093a912-dirty
pjbriggs
parents:
diff changeset
37 stream.close()
0abe6bac47a6 planemo upload for repository https://github.com/fls-bioinformatics-core/galaxy-tools/tree/master/rnachipintegrator commit 97d556dae96db5457590a3a257392b6e4093a912-dirty
pjbriggs
parents:
diff changeset
38 break
0abe6bac47a6 planemo upload for repository https://github.com/fls-bioinformatics-core/galaxy-tools/tree/master/rnachipintegrator commit 97d556dae96db5457590a3a257392b6e4093a912-dirty
pjbriggs
parents:
diff changeset
39 else:
0abe6bac47a6 planemo upload for repository https://github.com/fls-bioinformatics-core/galaxy-tools/tree/master/rnachipintegrator commit 97d556dae96db5457590a3a257392b6e4093a912-dirty
pjbriggs
parents:
diff changeset
40 raise ImportError("Couldn't find the real 'site' module")
0abe6bac47a6 planemo upload for repository https://github.com/fls-bioinformatics-core/galaxy-tools/tree/master/rnachipintegrator commit 97d556dae96db5457590a3a257392b6e4093a912-dirty
pjbriggs
parents:
diff changeset
41
0abe6bac47a6 planemo upload for repository https://github.com/fls-bioinformatics-core/galaxy-tools/tree/master/rnachipintegrator commit 97d556dae96db5457590a3a257392b6e4093a912-dirty
pjbriggs
parents:
diff changeset
42 #print "loaded", __file__
0abe6bac47a6 planemo upload for repository https://github.com/fls-bioinformatics-core/galaxy-tools/tree/master/rnachipintegrator commit 97d556dae96db5457590a3a257392b6e4093a912-dirty
pjbriggs
parents:
diff changeset
43
0abe6bac47a6 planemo upload for repository https://github.com/fls-bioinformatics-core/galaxy-tools/tree/master/rnachipintegrator commit 97d556dae96db5457590a3a257392b6e4093a912-dirty
pjbriggs
parents:
diff changeset
44 known_paths = dict([(makepath(item)[1],1) for item in sys.path]) # 2.2 comp
0abe6bac47a6 planemo upload for repository https://github.com/fls-bioinformatics-core/galaxy-tools/tree/master/rnachipintegrator commit 97d556dae96db5457590a3a257392b6e4093a912-dirty
pjbriggs
parents:
diff changeset
45
0abe6bac47a6 planemo upload for repository https://github.com/fls-bioinformatics-core/galaxy-tools/tree/master/rnachipintegrator commit 97d556dae96db5457590a3a257392b6e4093a912-dirty
pjbriggs
parents:
diff changeset
46 oldpos = getattr(sys,'__egginsert',0) # save old insertion position
0abe6bac47a6 planemo upload for repository https://github.com/fls-bioinformatics-core/galaxy-tools/tree/master/rnachipintegrator commit 97d556dae96db5457590a3a257392b6e4093a912-dirty
pjbriggs
parents:
diff changeset
47 sys.__egginsert = 0 # and reset the current one
0abe6bac47a6 planemo upload for repository https://github.com/fls-bioinformatics-core/galaxy-tools/tree/master/rnachipintegrator commit 97d556dae96db5457590a3a257392b6e4093a912-dirty
pjbriggs
parents:
diff changeset
48
0abe6bac47a6 planemo upload for repository https://github.com/fls-bioinformatics-core/galaxy-tools/tree/master/rnachipintegrator commit 97d556dae96db5457590a3a257392b6e4093a912-dirty
pjbriggs
parents:
diff changeset
49 for item in PYTHONPATH:
0abe6bac47a6 planemo upload for repository https://github.com/fls-bioinformatics-core/galaxy-tools/tree/master/rnachipintegrator commit 97d556dae96db5457590a3a257392b6e4093a912-dirty
pjbriggs
parents:
diff changeset
50 addsitedir(item)
0abe6bac47a6 planemo upload for repository https://github.com/fls-bioinformatics-core/galaxy-tools/tree/master/rnachipintegrator commit 97d556dae96db5457590a3a257392b6e4093a912-dirty
pjbriggs
parents:
diff changeset
51
0abe6bac47a6 planemo upload for repository https://github.com/fls-bioinformatics-core/galaxy-tools/tree/master/rnachipintegrator commit 97d556dae96db5457590a3a257392b6e4093a912-dirty
pjbriggs
parents:
diff changeset
52 sys.__egginsert += oldpos # restore effective old position
0abe6bac47a6 planemo upload for repository https://github.com/fls-bioinformatics-core/galaxy-tools/tree/master/rnachipintegrator commit 97d556dae96db5457590a3a257392b6e4093a912-dirty
pjbriggs
parents:
diff changeset
53
0abe6bac47a6 planemo upload for repository https://github.com/fls-bioinformatics-core/galaxy-tools/tree/master/rnachipintegrator commit 97d556dae96db5457590a3a257392b6e4093a912-dirty
pjbriggs
parents:
diff changeset
54 d, nd = makepath(stdpath[0])
0abe6bac47a6 planemo upload for repository https://github.com/fls-bioinformatics-core/galaxy-tools/tree/master/rnachipintegrator commit 97d556dae96db5457590a3a257392b6e4093a912-dirty
pjbriggs
parents:
diff changeset
55 insert_at = None
0abe6bac47a6 planemo upload for repository https://github.com/fls-bioinformatics-core/galaxy-tools/tree/master/rnachipintegrator commit 97d556dae96db5457590a3a257392b6e4093a912-dirty
pjbriggs
parents:
diff changeset
56 new_path = []
0abe6bac47a6 planemo upload for repository https://github.com/fls-bioinformatics-core/galaxy-tools/tree/master/rnachipintegrator commit 97d556dae96db5457590a3a257392b6e4093a912-dirty
pjbriggs
parents:
diff changeset
57
0abe6bac47a6 planemo upload for repository https://github.com/fls-bioinformatics-core/galaxy-tools/tree/master/rnachipintegrator commit 97d556dae96db5457590a3a257392b6e4093a912-dirty
pjbriggs
parents:
diff changeset
58 for item in sys.path:
0abe6bac47a6 planemo upload for repository https://github.com/fls-bioinformatics-core/galaxy-tools/tree/master/rnachipintegrator commit 97d556dae96db5457590a3a257392b6e4093a912-dirty
pjbriggs
parents:
diff changeset
59 p, np = makepath(item)
0abe6bac47a6 planemo upload for repository https://github.com/fls-bioinformatics-core/galaxy-tools/tree/master/rnachipintegrator commit 97d556dae96db5457590a3a257392b6e4093a912-dirty
pjbriggs
parents:
diff changeset
60
0abe6bac47a6 planemo upload for repository https://github.com/fls-bioinformatics-core/galaxy-tools/tree/master/rnachipintegrator commit 97d556dae96db5457590a3a257392b6e4093a912-dirty
pjbriggs
parents:
diff changeset
61 if np==nd and insert_at is None:
0abe6bac47a6 planemo upload for repository https://github.com/fls-bioinformatics-core/galaxy-tools/tree/master/rnachipintegrator commit 97d556dae96db5457590a3a257392b6e4093a912-dirty
pjbriggs
parents:
diff changeset
62 # We've hit the first 'system' path entry, so added entries go here
0abe6bac47a6 planemo upload for repository https://github.com/fls-bioinformatics-core/galaxy-tools/tree/master/rnachipintegrator commit 97d556dae96db5457590a3a257392b6e4093a912-dirty
pjbriggs
parents:
diff changeset
63 insert_at = len(new_path)
0abe6bac47a6 planemo upload for repository https://github.com/fls-bioinformatics-core/galaxy-tools/tree/master/rnachipintegrator commit 97d556dae96db5457590a3a257392b6e4093a912-dirty
pjbriggs
parents:
diff changeset
64
0abe6bac47a6 planemo upload for repository https://github.com/fls-bioinformatics-core/galaxy-tools/tree/master/rnachipintegrator commit 97d556dae96db5457590a3a257392b6e4093a912-dirty
pjbriggs
parents:
diff changeset
65 if np in known_paths or insert_at is None:
0abe6bac47a6 planemo upload for repository https://github.com/fls-bioinformatics-core/galaxy-tools/tree/master/rnachipintegrator commit 97d556dae96db5457590a3a257392b6e4093a912-dirty
pjbriggs
parents:
diff changeset
66 new_path.append(item)
0abe6bac47a6 planemo upload for repository https://github.com/fls-bioinformatics-core/galaxy-tools/tree/master/rnachipintegrator commit 97d556dae96db5457590a3a257392b6e4093a912-dirty
pjbriggs
parents:
diff changeset
67 else:
0abe6bac47a6 planemo upload for repository https://github.com/fls-bioinformatics-core/galaxy-tools/tree/master/rnachipintegrator commit 97d556dae96db5457590a3a257392b6e4093a912-dirty
pjbriggs
parents:
diff changeset
68 # new path after the insert point, back-insert it
0abe6bac47a6 planemo upload for repository https://github.com/fls-bioinformatics-core/galaxy-tools/tree/master/rnachipintegrator commit 97d556dae96db5457590a3a257392b6e4093a912-dirty
pjbriggs
parents:
diff changeset
69 new_path.insert(insert_at, item)
0abe6bac47a6 planemo upload for repository https://github.com/fls-bioinformatics-core/galaxy-tools/tree/master/rnachipintegrator commit 97d556dae96db5457590a3a257392b6e4093a912-dirty
pjbriggs
parents:
diff changeset
70 insert_at += 1
0abe6bac47a6 planemo upload for repository https://github.com/fls-bioinformatics-core/galaxy-tools/tree/master/rnachipintegrator commit 97d556dae96db5457590a3a257392b6e4093a912-dirty
pjbriggs
parents:
diff changeset
71
0abe6bac47a6 planemo upload for repository https://github.com/fls-bioinformatics-core/galaxy-tools/tree/master/rnachipintegrator commit 97d556dae96db5457590a3a257392b6e4093a912-dirty
pjbriggs
parents:
diff changeset
72 sys.path[:] = new_path
0abe6bac47a6 planemo upload for repository https://github.com/fls-bioinformatics-core/galaxy-tools/tree/master/rnachipintegrator commit 97d556dae96db5457590a3a257392b6e4093a912-dirty
pjbriggs
parents:
diff changeset
73
0abe6bac47a6 planemo upload for repository https://github.com/fls-bioinformatics-core/galaxy-tools/tree/master/rnachipintegrator commit 97d556dae96db5457590a3a257392b6e4093a912-dirty
pjbriggs
parents:
diff changeset
74 if __name__=='site':
0abe6bac47a6 planemo upload for repository https://github.com/fls-bioinformatics-core/galaxy-tools/tree/master/rnachipintegrator commit 97d556dae96db5457590a3a257392b6e4093a912-dirty
pjbriggs
parents:
diff changeset
75 __boot()
0abe6bac47a6 planemo upload for repository https://github.com/fls-bioinformatics-core/galaxy-tools/tree/master/rnachipintegrator commit 97d556dae96db5457590a3a257392b6e4093a912-dirty
pjbriggs
parents:
diff changeset
76 del __boot