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annotate test-data/illuminaPE_microsats.out @ 3:1cea7b4b838f draft

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Uploaded version 0.02.04.3.
author pjbriggs
date Fri, 04 Dec 2015 04:36:51 -0500
parents 1dac42bb7aab
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1dac42bb7aab First version pushed to test toolshed.
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1 readPairID Motifs(bases) Bases in all Motifs Possible Extended Possible Spanning Primers found (1=y,0=n) F Primer Name Forward Primer R Primer Name Reverse Primer Amplicon Motifs Number motif bases in amplicon Primers on sep reads Extend with primers Spand with primers Occurances of Forward Primer in Reads Occurances of Reverse Primer in Reads Occurances of Amplifiable Primer Pair in Reads Occurances of Amplifiable Primer Pair in PALs
3
1cea7b4b838f Uploaded version 0.02.04.3.
pjbriggs
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2 ILLUMINA-545855:49:FC61RLR:2:1:10979:1695 TC(14) 14 1 test_7 TTCTCCCACTATATTTTGCATTGG test_8 TCCAGACTGAAGCTACCCTGG TC(14) 14 1 1 1 1 1
1cea7b4b838f Uploaded version 0.02.04.3.
pjbriggs
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3 ILLUMINA-545855:49:FC61RLR:2:1:17449:1584 AC(36) 36 0
1cea7b4b838f Uploaded version 0.02.04.3.
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4 ILLUMINA-545855:49:FC61RLR:2:1:19063:1614 AT(14) AT(14) AT(14) AT(14) 56 0
1cea7b4b838f Uploaded version 0.02.04.3.
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5 ILLUMINA-545855:49:FC61RLR:2:1:1978:1220 AC(12) 12 1 test_3 GCAGTAAACAAAGGCAAAGGG test_4 CCTGGGCAGAGGTGTTCC AC(12) 12 1 1 1 1 1
1cea7b4b838f Uploaded version 0.02.04.3.
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6 ILLUMINA-545855:49:FC61RLR:2:1:5626:1554 AT(14) AC(16) AC(16) AT(12) 58 0
1cea7b4b838f Uploaded version 0.02.04.3.
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7 ILLUMINA-545855:49:FC61RLR:2:1:5879:1238 AT(12) 12 0
1cea7b4b838f Uploaded version 0.02.04.3.
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8 ILLUMINA-545855:49:FC61RLR:2:1:6204:1090 TC(12) 12 0
1cea7b4b838f Uploaded version 0.02.04.3.
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9 ILLUMINA-545855:49:FC61RLR:2:1:8044:1926 AT(12) 12 0
1cea7b4b838f Uploaded version 0.02.04.3.
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10 ILLUMINA-545855:49:FC61RLR:2:1:8157:1636 AC(12) 12 1 test_5 AAGTACAGTGGGGAGGCTGG test_6 TTTTCTACACAGCTCAAGTAGCCC AC(12) 12 1 1 1 1 1
1cea7b4b838f Uploaded version 0.02.04.3.
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11 ILLUMINA-545855:49:FC61RLR:2:1:8899:1514 AC(12) AC(12) 24 1 test_2 TCTTTATCTAAACACATCCTGAAATACC test_1 AAACGCAATTATTTTGAGATGTCC AC(12) AC(12) 24 1 1 2 1 1