Mercurial > repos > pjbriggs > macs21
diff README.rst @ 9:7aecd0908b3c draft
Uploaded version 2.1.0-4.
author | pjbriggs |
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date | Mon, 15 Jun 2015 06:06:48 -0400 |
parents | a881c5b7162c |
children | f346287fe52c |
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--- a/README.rst Tue Apr 21 10:33:52 2015 -0400 +++ b/README.rst Mon Jun 15 06:06:48 2015 -0400 @@ -1,7 +1,7 @@ -MACS21: Model-based Analysis of ChIP-Seq (MACS 2.1.0) -===================================================== +MACS21: Model-based Analysis of ChIP-Seq (MACS 2.1.0) peak calling +================================================================== -Galaxy tool wrapper for the MACS 2.1.0 ChIP-seq peak calling program. MACS has been +Galaxy tool wrapper for the peak calling function of MACS 2.1.0. MACS has been developed by Tao Lui https://github.com/taoliu/MACS/ @@ -31,7 +31,7 @@ <tool file="macs21/macs21_wrapper.xml" /> -You will also need to install MACS 2.1.0: +You will also need to install MACS 2.1.0 and its dependencies: - https://pypi.python.org/pypi/MACS2 @@ -42,24 +42,25 @@ ./run_tests.sh -id macs2_wrapper -(However there are no tests defined at present.) History ======= -This tool is based on the ``modencode-dcc`` MACS2 tool developed by Ziru Zhou -(ziruzhou@gmail.com), specifically the ``16:14f378e35191`` revision of the -tool at +This tool was originally based on the ``modencode-dcc`` MACS2 tool developed +by Ziru Zhou (ziruzhou@gmail.com), specifically the ``16:14f378e35191`` +revision of the tool available via - http://toolshed.g2.bx.psu.edu/view/modencode-dcc/macs2 -It has been substantially modified both to adapt it to MACS 2.1.0, and to -re-implement the internal workings of the tool to conform with current practices -in invoking commands from Galaxy. +This version has been substantially modified both to adapt it to MACS 2.1.0, and +to re-implement the internal workings of the tool to conform with current +practices in invoking commands from Galaxy, and to add new functionality. ========== ====================================================================== Version Changes ---------- ---------------------------------------------------------------------- +2.1.0-4 - Remove 'bdgcmp' functionality. +2.1.0-3 - Add tool tests 2.1.0-2 - Add option to create bigWig file from bedGraphs; fix bug with -B option; make --mfold defaults consistent. 2.1.0-1 - Initial version