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comparison tool_dependencies.xml @ 7:0c6b14f3fefc draft

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Attempt to fix installation of tool dependencies for UCSC/bigwig generation, and trap for undefined genome build.
author pjbriggs
date Tue, 21 Apr 2015 08:29:16 -0400
parents 344dd37d1704
children 7aecd0908b3c
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6:344dd37d1704 7:0c6b14f3fefc
30 <url_template architecture="x86_64" os="linux">http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bedGraphToBigWig</url_template> 30 <url_template architecture="x86_64" os="linux">http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bedGraphToBigWig</url_template>
31 </action> 31 </action>
32 <action type="chmod"> 32 <action type="chmod">
33 <file mode="755">$INSTALL_DIR/bedGraphToBigWig</file> 33 <file mode="755">$INSTALL_DIR/bedGraphToBigWig</file>
34 </action> 34 </action>
35 <action type="set_environment">
36 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR</environment_variable>
37 </action>
35 </actions> 38 </actions>
36 </install> 39 </install>
37 </package> 40 </package>
38 <!-- MACS 2.1.0 --> 41 <!-- MACS 2.1.0 -->
39 <package name="macs2" version="2.1.0.20140616"> 42 <package name="macs2" version="2.1.0.20140616">