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annotate tool_dependencies.xml @ 1:d0986d2be693 draft

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Substantial reimplementation of internals, also renamed id and version.
author pjbriggs
date Thu, 29 Jan 2015 11:11:21 -0500
parents fdad0c8c0957
children 15889783e759
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="python" version="2.7">
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4 <repository changeset_revision="2c52c900e56a" name="package_python_2_7" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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5 </package>
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6 <package name="numpy" version="1.8.1">
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7 <repository changeset_revision="0f9f634dec8a" name="package_numpy_1_8" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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8 </package>
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9 <package name="macs2" version="2.1.0.20140616">
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10 <install version="1.0">
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11 <actions>
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12 <action type="download_by_url">https://pypi.python.org/packages/source/M/MACS2/MACS2-2.1.0.20140616.tar.gz</action>
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13 <action type="set_environment_for_install">
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14 <repository changeset_revision="2c52c900e56a" name="package_python_2_7" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
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15 <package name="python" version="2.7" />
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16 </repository>
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17 <repository changeset_revision="0f9f634dec8a" name="package_numpy_1_8" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
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18 <package name="numpy" version="1.8.1" />
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19 </repository>
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20 </action>
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21 <action type="make_directory">$INSTALL_DIR/lib/python</action>
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22 <action type="shell_command">
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23 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp;
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24 python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin
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25 </action>
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26 <action type="set_environment">
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27 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
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28 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
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29 </action>
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30 </actions>
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31 </install>
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32 <readme>Macs2.1 depends on having python2.7 and numpy 1.8 installed on all nodes of the work cluster</readme>
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33 </package>
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34 </tool_dependency>