annotate Amplicon_analysis-galaxy-update-to-Amplicon_analysis_pipeline-1.3/.shed.yml @ 41:7b9786a43a16 draft

Uploaded test version 1.3.5.0.
author pjbriggs
date Thu, 05 Dec 2019 11:44:03 +0000
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1 ---
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2 categories:
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3 - Metagenomics
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4 description: Analyse paired-end 16S rRNA data from Illumina Miseq
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5 homepage_url: https://github.com/MTutino/Amplicon_analysis
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6 long_description: |
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7 A Galaxy tool wrapper to Mauro Tutino's Amplicon_analysis pipeline
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8 at https://github.com/MTutino/Amplicon_analysis
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9
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10 The pipeline can analyse paired-end 16S rRNA data from Illumina Miseq
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11 (Casava >= 1.8) and performs: QC and clean up of input data; removal of
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12 singletons and chimeras and building of OTU table and phylogenetic tree;
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13 beta and alpha diversity analysis
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14 name: amplicon_analysis_pipeline
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15 owner: pjbriggs
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16 remote_repository_url: https://github.com/pjbriggs/Amplicon_analysis-galaxy