Mercurial > repos > pimarin > recentrifuge
annotate test-data/kraken_test/test1_csv.log @ 7:9940b2fbc06f draft default tip
"planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit b537a57a1de919afa1c6a23048862676b87d7c18"
| author | pimarin |
|---|---|
| date | Tue, 24 May 2022 06:35:06 +0000 |
| parents | 512dc05a0e5a |
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| rev | line source |
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e5474449c35d
"planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit 000b196a8781301582ee706ab287f65f27478a12-dirty"
pimarin
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1 |
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512dc05a0e5a
"planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit 0bff76499478da0f47e93e02542414d6a2aa8077"
pimarin
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2 =-= /home/pierre/anaconda3/envs/rcf/bin/rcf =-= v1.8.1 - Mar 2022 =-= by Jose Manuel Martà =-= |
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e5474449c35d
"planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit 000b196a8781301582ee706ab287f65f27478a12-dirty"
pimarin
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3 |
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e5474449c35d
"planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit 000b196a8781301582ee706ab287f65f27478a12-dirty"
pimarin
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4 [90mLoading NCBI nodes...[0m[92m OK! [0m |
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e5474449c35d
"planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit 000b196a8781301582ee706ab287f65f27478a12-dirty"
pimarin
parents:
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5 [90mLoading NCBI names...[0m[92m OK! [0m |
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e5474449c35d
"planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit 000b196a8781301582ee706ab287f65f27478a12-dirty"
pimarin
parents:
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6 [90mBuilding dict of parent to children taxa...[0m[92m OK! [0m |
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e5474449c35d
"planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit 000b196a8781301582ee706ab287f65f27478a12-dirty"
pimarin
parents:
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7 [90m |
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e5474449c35d
"planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit 000b196a8781301582ee706ab287f65f27478a12-dirty"
pimarin
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8 Please, wait, processing files in parallel... |
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e5474449c35d
"planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit 000b196a8781301582ee706ab287f65f27478a12-dirty"
pimarin
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9 [0m |
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512dc05a0e5a
"planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit 0bff76499478da0f47e93e02542414d6a2aa8077"
pimarin
parents:
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10 [90mLoading output file kraken_test/kraken.out... [0m[92mOK! |
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e5474449c35d
"planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit 000b196a8781301582ee706ab287f65f27478a12-dirty"
pimarin
parents:
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11 [0m[90m Seqs read: [0m99 [90m[[0m52.81 knt[90m] |
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e5474449c35d
"planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit 000b196a8781301582ee706ab287f65f27478a12-dirty"
pimarin
parents:
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12 [0m[90m Seqs clas: [0m99 [90m([0m0.00%[90m unclassified) |
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e5474449c35d
"planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit 000b196a8781301582ee706ab287f65f27478a12-dirty"
pimarin
parents:
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13 [0m[90m Seqs pass: [0m99 [90m([0m0.00%[90m rejected) |
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e5474449c35d
"planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit 000b196a8781301582ee706ab287f65f27478a12-dirty"
pimarin
parents:
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14 [0m[90m Scores SHEL: min = [0m36.0,[90m max = [0m347.0,[90m avr = [0m99.9 |
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e5474449c35d
"planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit 000b196a8781301582ee706ab287f65f27478a12-dirty"
pimarin
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15 [90m Coverage(%): min = [0m0.2,[90m max = [0m88.1,[90m avr = [0m15.4 |
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e5474449c35d
"planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit 000b196a8781301582ee706ab287f65f27478a12-dirty"
pimarin
parents:
diff
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16 [90m Read length: min = [0m198 nt,[90m max = [0m602 nt,[90m avr = [0m533 nt |
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e5474449c35d
"planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit 000b196a8781301582ee706ab287f65f27478a12-dirty"
pimarin
parents:
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17 [90m TaxIds: by classifier = [0m13[90m, by filter = [0m13 |
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e5474449c35d
"planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit 000b196a8781301582ee706ab287f65f27478a12-dirty"
pimarin
parents:
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18 [90mBuilding from raw data with mintaxa = [0m2[90m ... |
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e5474449c35d
"planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit 000b196a8781301582ee706ab287f65f27478a12-dirty"
pimarin
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19 [0m[90m Check for more seqs lost ([in/ex]clude affects)... [0m[94m |
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e5474449c35d
"planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit 000b196a8781301582ee706ab287f65f27478a12-dirty"
pimarin
parents:
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20 Info:[0m 65 [90madditional seqs discarded ([0m65.657% [90mof accepted) |
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e5474449c35d
"planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit 000b196a8781301582ee706ab287f65f27478a12-dirty"
pimarin
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21 [0m[93m |
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e5474449c35d
"planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit 000b196a8781301582ee706ab287f65f27478a12-dirty"
pimarin
parents:
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22 Warning![0m 9 orphan taxids[90m (rerun with --debug for details) |
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512dc05a0e5a
"planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit 0bff76499478da0f47e93e02542414d6a2aa8077"
pimarin
parents:
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23 [0mkraken_test/kraken[94m sample [0m[92mOK! |
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512dc05a0e5a
"planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit 0bff76499478da0f47e93e02542414d6a2aa8077"
pimarin
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24 [0m[90mLoad elapsed time: [0m0.00266[90m sec |
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e5474449c35d
"planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit 000b196a8781301582ee706ab287f65f27478a12-dirty"
pimarin
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25 [0m |
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e5474449c35d
"planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit 000b196a8781301582ee706ab287f65f27478a12-dirty"
pimarin
parents:
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26 [90m |
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e5474449c35d
"planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit 000b196a8781301582ee706ab287f65f27478a12-dirty"
pimarin
parents:
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27 Building the taxonomy multiple tree... [0m[92mOK![0m |
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e5474449c35d
"planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit 000b196a8781301582ee706ab287f65f27478a12-dirty"
pimarin
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28 [90mGenerating interactive plot ([0m[95moutput.rcf.html[0m[90m)... [0m[92mOK![0m |
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e5474449c35d
"planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit 000b196a8781301582ee706ab287f65f27478a12-dirty"
pimarin
parents:
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29 [90mGenerating csv extra output ([0m[95m[output.rcf.]*.csv[0m[90m)... [0m[92mOK![0m |
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e5474449c35d
"planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit 000b196a8781301582ee706ab287f65f27478a12-dirty"
pimarin
parents:
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30 [90mTotal elapsed time:[0m 00:00:00 |