Mercurial > repos > pimarin > recentrifuge
diff test-data/kraken_test/test1_csv.log @ 0:e5474449c35d draft
"planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit 000b196a8781301582ee706ab287f65f27478a12-dirty"
| author | pimarin |
|---|---|
| date | Wed, 06 Apr 2022 10:31:22 +0000 |
| parents | |
| children | 512dc05a0e5a |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/kraken_test/test1_csv.log Wed Apr 06 10:31:22 2022 +0000 @@ -0,0 +1,30 @@ + +=-= /home/pierre/anaconda3/envs/__recentrifuge@1.8.1/bin/rcf =-= v1.8.1 - Mar 2022 =-= by Jose Manuel Martà =-= + +[90mLoading NCBI nodes...[0m[92m OK! [0m +[90mLoading NCBI names...[0m[92m OK! [0m +[90mBuilding dict of parent to children taxa...[0m[92m OK! [0m +[90m +Please, wait, processing files in parallel... +[0m +[90mLoading output file /tmp/tmpx0jnr7cr/files/4/d/3/dataset_4d340be5-1b4f-4ffe-9257-248066878896.dat... [0m[92mOK! +[0m[90m Seqs read: [0m99 [90m[[0m52.81 knt[90m] +[0m[90m Seqs clas: [0m99 [90m([0m0.00%[90m unclassified) +[0m[90m Seqs pass: [0m99 [90m([0m0.00%[90m rejected) +[0m[90m Scores SHEL: min = [0m36.0,[90m max = [0m347.0,[90m avr = [0m99.9 +[90m Coverage(%): min = [0m0.2,[90m max = [0m88.1,[90m avr = [0m15.4 +[90m Read length: min = [0m198 nt,[90m max = [0m602 nt,[90m avr = [0m533 nt +[90m TaxIds: by classifier = [0m13[90m, by filter = [0m13 +[90mBuilding from raw data with mintaxa = [0m2[90m ... +[0m[90m Check for more seqs lost ([in/ex]clude affects)... [0m[94m + Info:[0m 65 [90madditional seqs discarded ([0m65.657% [90mof accepted) +[0m[93m + Warning![0m 9 orphan taxids[90m (rerun with --debug for details) +[0m/tmp/tmpx0jnr7cr/files/4/d/3/dataset_4d340be5-1b4f-4ffe-9257-248066878896[94m sample [0m[92mOK! +[0m[90mLoad elapsed time: [0m0.00394[90m sec +[0m +[90m +Building the taxonomy multiple tree... [0m[92mOK![0m +[90mGenerating interactive plot ([0m[95moutput.rcf.html[0m[90m)... [0m[92mOK![0m +[90mGenerating csv extra output ([0m[95m[output.rcf.]*.csv[0m[90m)... [0m[92mOK![0m +[90mTotal elapsed time:[0m 00:00:00