Mercurial > repos > pimarin > recentrifuge
annotate test-data/centrifuge_test/test2_multicsv.log @ 4:512dc05a0e5a draft
"planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit 0bff76499478da0f47e93e02542414d6a2aa8077"
| author | pimarin |
|---|---|
| date | Wed, 18 May 2022 09:28:48 +0000 |
| parents | e5474449c35d |
| children |
| rev | line source |
|---|---|
|
0
e5474449c35d
"planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit 000b196a8781301582ee706ab287f65f27478a12-dirty"
pimarin
parents:
diff
changeset
|
1 |
|
4
512dc05a0e5a
"planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit 0bff76499478da0f47e93e02542414d6a2aa8077"
pimarin
parents:
0
diff
changeset
|
2 =-= /home/pierre/anaconda3/envs/rcf/bin/rcf =-= v1.8.1 - Mar 2022 =-= by Jose Manuel Martà =-= |
|
0
e5474449c35d
"planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit 000b196a8781301582ee706ab287f65f27478a12-dirty"
pimarin
parents:
diff
changeset
|
3 |
|
e5474449c35d
"planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit 000b196a8781301582ee706ab287f65f27478a12-dirty"
pimarin
parents:
diff
changeset
|
4 [90mLoading NCBI nodes...[0m[92m OK! [0m |
|
e5474449c35d
"planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit 000b196a8781301582ee706ab287f65f27478a12-dirty"
pimarin
parents:
diff
changeset
|
5 [90mLoading NCBI names...[0m[92m OK! [0m |
|
e5474449c35d
"planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit 000b196a8781301582ee706ab287f65f27478a12-dirty"
pimarin
parents:
diff
changeset
|
6 [90mBuilding dict of parent to children taxa...[0m[92m OK! [0m |
|
e5474449c35d
"planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit 000b196a8781301582ee706ab287f65f27478a12-dirty"
pimarin
parents:
diff
changeset
|
7 [90m |
|
e5474449c35d
"planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit 000b196a8781301582ee706ab287f65f27478a12-dirty"
pimarin
parents:
diff
changeset
|
8 Please, wait, processing files in parallel... |
|
e5474449c35d
"planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit 000b196a8781301582ee706ab287f65f27478a12-dirty"
pimarin
parents:
diff
changeset
|
9 [0m |
|
4
512dc05a0e5a
"planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit 0bff76499478da0f47e93e02542414d6a2aa8077"
pimarin
parents:
0
diff
changeset
|
10 [90mLoading output file centrifuge_test/centrifuge.out... [0m[92mOK! |
|
0
e5474449c35d
"planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit 000b196a8781301582ee706ab287f65f27478a12-dirty"
pimarin
parents:
diff
changeset
|
11 [0m[90m Seqs read: [0m99 [90m[[0m40.35 knt[90m] |
|
e5474449c35d
"planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit 000b196a8781301582ee706ab287f65f27478a12-dirty"
pimarin
parents:
diff
changeset
|
12 [0m[90m Seqs clas: [0m91 [90m([0m8.08%[90m unclassified) |
|
e5474449c35d
"planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit 000b196a8781301582ee706ab287f65f27478a12-dirty"
pimarin
parents:
diff
changeset
|
13 [0m[90m Seqs pass: [0m91 [90m([0m0.00%[90m rejected) |
|
e5474449c35d
"planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit 000b196a8781301582ee706ab287f65f27478a12-dirty"
pimarin
parents:
diff
changeset
|
14 [0m[90m Scores: min = [0m41.0[90m, max = [0m300.0[90m, avr = [0m163.7 |
|
e5474449c35d
"planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit 000b196a8781301582ee706ab287f65f27478a12-dirty"
pimarin
parents:
diff
changeset
|
15 [90m Length: min = [0m90 nt[90m, max = [0m602 nt[90m, avr = [0m406 nt |
|
e5474449c35d
"planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit 000b196a8781301582ee706ab287f65f27478a12-dirty"
pimarin
parents:
diff
changeset
|
16 [90m TaxIds: by classifier = [0m8[90m, by filter = [0m8 |
|
e5474449c35d
"planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit 000b196a8781301582ee706ab287f65f27478a12-dirty"
pimarin
parents:
diff
changeset
|
17 [90mBuilding from raw data with mintaxa = [0m2[90m ... |
|
e5474449c35d
"planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit 000b196a8781301582ee706ab287f65f27478a12-dirty"
pimarin
parents:
diff
changeset
|
18 [0m[90m Check for more seqs lost ([in/ex]clude affects)... [0m[94m |
|
e5474449c35d
"planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit 000b196a8781301582ee706ab287f65f27478a12-dirty"
pimarin
parents:
diff
changeset
|
19 Info:[0m 89 [90madditional seqs discarded ([0m97.802% [90mof accepted) |
|
e5474449c35d
"planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit 000b196a8781301582ee706ab287f65f27478a12-dirty"
pimarin
parents:
diff
changeset
|
20 [0m[93m |
|
e5474449c35d
"planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit 000b196a8781301582ee706ab287f65f27478a12-dirty"
pimarin
parents:
diff
changeset
|
21 Warning![0m 7 orphan taxids[90m (rerun with --debug for details) |
|
4
512dc05a0e5a
"planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit 0bff76499478da0f47e93e02542414d6a2aa8077"
pimarin
parents:
0
diff
changeset
|
22 [0mcentrifuge_test/centrifuge[94m sample [0m[92mOK! |
|
512dc05a0e5a
"planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit 0bff76499478da0f47e93e02542414d6a2aa8077"
pimarin
parents:
0
diff
changeset
|
23 [0m[90mLoad elapsed time: [0m0.00151[90m sec |
|
0
e5474449c35d
"planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit 000b196a8781301582ee706ab287f65f27478a12-dirty"
pimarin
parents:
diff
changeset
|
24 [0m |
|
e5474449c35d
"planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit 000b196a8781301582ee706ab287f65f27478a12-dirty"
pimarin
parents:
diff
changeset
|
25 [90m |
|
e5474449c35d
"planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit 000b196a8781301582ee706ab287f65f27478a12-dirty"
pimarin
parents:
diff
changeset
|
26 Building the taxonomy multiple tree... [0m[92mOK![0m |
|
e5474449c35d
"planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit 000b196a8781301582ee706ab287f65f27478a12-dirty"
pimarin
parents:
diff
changeset
|
27 [90mGenerating multicsv extra output ([0m[95m[output.rcf.]*.csv[0m[90m)... [0m[92mOK![0m |
|
e5474449c35d
"planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit 000b196a8781301582ee706ab287f65f27478a12-dirty"
pimarin
parents:
diff
changeset
|
28 [90mTotal elapsed time:[0m 00:00:00 |