Mercurial > repos > pimarin > data_manager_fetch_plasmidfinder
changeset 7:ed0f59ab5e61 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_plasmidfinder commit f2f2ea487a2313a18e5871e5d089b0e248f5fefe
| author | pimarin |
|---|---|
| date | Wed, 23 Aug 2023 10:57:19 +0000 |
| parents | 4e933a39094f |
| children | f99089461adb |
| files | data_manager_conf.xml plasmidfinder_database.loc tool-data/plasmidfinder_database.loc.sample |
| diffstat | 3 files changed, 5 insertions(+), 13 deletions(-) [+] |
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--- a/data_manager_conf.xml Wed Aug 23 08:23:25 2023 +0000 +++ b/data_manager_conf.xml Wed Aug 23 10:57:19 2023 +0000 @@ -1,10 +1,11 @@ +<?xml version="1.0"?> <data_managers> <data_manager tool_file="data_manager/plasmidfinder_fetch_database.xml" id="plasmidfinder_fetch_database"> <data_table name="plasmidfinder_database"> <output> - <column name="value" /> - <column name="name" /> - <column name="date" /> + <column name="value"/> + <column name="name"/> + <column name="date"/> <column name="path" output_ref="output_file"> <move type="directory" relativize_symlinks="True"> <source>${path}</source>
--- a/plasmidfinder_database.loc Wed Aug 23 08:23:25 2023 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,8 +0,0 @@ -# this is a tab separated file describing the location of plasmidfinder database -# The name was obtained by merging date of download and commit number -# the columns are: -# value, name, date, path -# -# for example -#plasmidfinder_9002e7282dd0_2022-12-20 9002e7282dd0_2022-12-20 2022-12-20 plasmidfinder-db -#plasmidfinder_1307168b1ce7_2022-12-20 2.1_2022-12-20 2022-12-20 plasmidfinder-db
--- a/tool-data/plasmidfinder_database.loc.sample Wed Aug 23 08:23:25 2023 +0000 +++ b/tool-data/plasmidfinder_database.loc.sample Wed Aug 23 10:57:19 2023 +0000 @@ -4,5 +4,4 @@ # value, name, date, path # # for example -#plasmidfinder_9002e7282dd0_2022-12-20 9002e7282dd0_2022-12-20 2022-12-20 plasmidfinder-db -#plasmidfinder_1307168b1ce7_2022-12-20 2.1_2022-12-20 2022-12-20 plasmidfinder-db +#plasmidfinder_1307168_2019_08_28 2.1_2019_08_28 2019_08_28 plasmidfinder-db