Mercurial > repos > pimarin > data_manager_fetch_plasmidfinder
diff data_manager/plasmidfinder_fetch_database.xml @ 1:9ef108e34063 draft
planemo upload commit 32f035f6404452fc8a1cf01d71be3c0b46548338
author | pimarin |
---|---|
date | Wed, 15 Feb 2023 10:35:15 +0000 |
parents | 8ad77a9dc91d |
children | bd56ac4cca16 |
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--- a/data_manager/plasmidfinder_fetch_database.xml Tue Feb 14 14:25:43 2023 +0000 +++ b/data_manager/plasmidfinder_fetch_database.xml Wed Feb 15 10:35:15 2023 +0000 @@ -1,3 +1,4 @@ + <tool id="data_manager_fetch_plasmidfinder" name="plasmidfinder_datamanager" tool_type="manage_data" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@"> <description>plasmidfinder database builder</description> <macros> @@ -25,7 +26,7 @@ <param name="database_select" value="latest"/> <output name="output_file" value="plasmidfinder_test_data_manager_latest.json"> <assert_contents> - <has_text_matching expression='{"data_tables": {"plasmidfinder_database": [{"date": "\d\d\d\d-\d\d-\d\d", "name": "b1c9ddac0e61_\d\d\d\d-\d\d-\d\d", "path": "plasmidfinder-db", "value": "plasmidfinder_b1c9ddac0e61_\d\d\d\d-\d\d-\d\d"' /> + <has_text_matching expression='\{"data_tables":\ \{\"plasmidfinder_database\"\:\ \[\{\"date\"\:\ \"\d\d\d\d\w\d\d\w\d\d\", \"name\"\: \"\w\w\w\w\w\w\w\w\w\w\w\w\d\d\d\d-\d\d-\d\d\",\ \"path\"\:\ \"plasmidfinder-db\",\ \"value\"\:\ \"plasmidfinder_\w\w\w\w\w\w\w\w\w\w\w_\d\d\d\d-\d\d-\d\d\"' /> </assert_contents> </output> </test> @@ -34,7 +35,7 @@ <param name="database_select" value="2.1"/> <output name="output_file" value="plasmidfinder_test_data_manager_2.1.json"> <assert_contents> - <has_text_matching expression='"data_tables": \{"plasmidfinder_database": \[\{"date": "\d\d\d\\d-\d\d-\d\d", "name": "2\.1_\d\d\d\d-\d\d-\d\d", "path": "plasmidfinder-db", "value": "plasmidfinder_1307168b1ce7_\d\d\d\d-\d\d-\d\d"' /> + <has_text_matching expression='"data_tables": \{"plasmidfinder_database": \[\{"date": "\d\d\d\\d-\d\d-\d\d", "name": "2\.1_\d\d\d\d-\d\d-\d\d", "path": "plasmidfinder-db", "value": "plasmidfinder_\w\w\w\w\w\w\w\w\w\w\w\w_\d\d\d\d-\d\d-\d\d"' /> </assert_contents> </output> </test>