Mercurial > repos > pimarin > data_manager_fetch_plasmidfinder

comparison data_manager/plasmidfinder_fetch_database.xml @ 1:9ef108e34063 draft

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planemo upload commit 32f035f6404452fc8a1cf01d71be3c0b46548338
author pimarin
date Wed, 15 Feb 2023 10:35:15 +0000
parents 8ad77a9dc91d
children bd56ac4cca16
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0:8ad77a9dc91d 1:9ef108e34063
1
1 <tool id="data_manager_fetch_plasmidfinder" name="plasmidfinder_datamanager" tool_type="manage_data" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@"> 2 <tool id="data_manager_fetch_plasmidfinder" name="plasmidfinder_datamanager" tool_type="manage_data" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
2 <description>plasmidfinder database builder</description> 3 <description>plasmidfinder database builder</description>
3 <macros> 4 <macros>
4 <import>macro.xml</import> 5 <import>macro.xml</import>
5 </macros> 6 </macros>
23 <!-- Test_1 DB latest --> 24 <!-- Test_1 DB latest -->
24 <test expect_num_outputs="1"> 25 <test expect_num_outputs="1">
25 <param name="database_select" value="latest"/> 26 <param name="database_select" value="latest"/>
26 <output name="output_file" value="plasmidfinder_test_data_manager_latest.json"> 27 <output name="output_file" value="plasmidfinder_test_data_manager_latest.json">
27 <assert_contents> 28 <assert_contents>
28 <has_text_matching expression='{"data_tables": {"plasmidfinder_database": [{"date": "\d\d\d\d-\d\d-\d\d", "name": "b1c9ddac0e61_\d\d\d\d-\d\d-\d\d", "path": "plasmidfinder-db", "value": "plasmidfinder_b1c9ddac0e61_\d\d\d\d-\d\d-\d\d"' /> 29 <has_text_matching expression='\{"data_tables":\ \{\"plasmidfinder_database\"\:\ \[\{\"date\"\:\ \"\d\d\d\d\w\d\d\w\d\d\", \"name\"\: \"\w\w\w\w\w\w\w\w\w\w\w\w\d\d\d\d-\d\d-\d\d\",\ \"path\"\:\ \"plasmidfinder-db\",\ \"value\"\:\ \"plasmidfinder_\w\w\w\w\w\w\w\w\w\w\w_\d\d\d\d-\d\d-\d\d\"' />
29 </assert_contents> 30 </assert_contents>
30 </output> 31 </output>
31 </test> 32 </test>
32 <!-- Test_2 DB 2.1 --> 33 <!-- Test_2 DB 2.1 -->
33 <test expect_num_outputs="1"> 34 <test expect_num_outputs="1">
34 <param name="database_select" value="2.1"/> 35 <param name="database_select" value="2.1"/>
35 <output name="output_file" value="plasmidfinder_test_data_manager_2.1.json"> 36 <output name="output_file" value="plasmidfinder_test_data_manager_2.1.json">
36 <assert_contents> 37 <assert_contents>
37 <has_text_matching expression='"data_tables": \{"plasmidfinder_database": \[\{"date": "\d\d\d\\d-\d\d-\d\d", "name": "2\.1_\d\d\d\d-\d\d-\d\d", "path": "plasmidfinder-db", "value": "plasmidfinder_1307168b1ce7_\d\d\d\d-\d\d-\d\d"' /> 38 <has_text_matching expression='"data_tables": \{"plasmidfinder_database": \[\{"date": "\d\d\d\\d-\d\d-\d\d", "name": "2\.1_\d\d\d\d-\d\d-\d\d", "path": "plasmidfinder-db", "value": "plasmidfinder_\w\w\w\w\w\w\w\w\w\w\w\w_\d\d\d\d-\d\d-\d\d"' />
38 </assert_contents> 39 </assert_contents>
39 </output> 40 </output>
40 </test> 41 </test>
41 </tests> 42 </tests>
42 <help><![CDATA[ 43 <help><![CDATA[