Mercurial > repos > pimarin > data_manager_bakta

comparison data_manager_conf.xml @ 1:faae5d8ce0cb draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bakta commit 4c11a77fb4c0bb74c0c4ae381c85971e01ed973e-dirty
author pimarin
date Thu, 27 Oct 2022 13:54:13 +0000
parents 9d08486abf8e
children decc1723cf97
comparison
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0:9d08486abf8e 1:faae5d8ce0cb
1 <data_managers> 1 <data_managers>
2 <data_manager tool_file="data_manager/bakta_build_database.xml" id="bakta_build_database" version="2.1.1+galaxy0"> 2 <data_manager tool_file="data_manager/bakta_build_database.xml" id="data_manager_build_bakta_database" version="2.1.1+galaxy0">
3 <data_table name="bakta_database"> 3 <data_table name="bakta_database">
4 <output> 4 <output>
5 <column name="value"/> 5 <column name="value"/>
6 <column name="name"/> 6 <column name="dbkey"/>
7 <column name="database_record"/>
8 <column name="bakta_version"/>
7 <column name="path" output_ref="output_file"> 9 <column name="path" output_ref="output_file">
8 <move type="directory" relativize_symlinks="True"> 10 <move type="directory" relativize_symlinks="True">
9 <!-- <source>${path}</source>--> <!-- out_file.extra_files_path is used as base by default --> <!-- if no source, eg for type=directory, then refers to base --> 11 <!-- <source>${path}</source>--> <!-- out_file.extra_files_path is used as base by default --> <!-- if no source, eg for type=directory, then refers to base -->
10 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${value}/bakta_database/${name}</target> 12 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">bakta_database/${dbkey}/${path}</target>
11 </move> 13 </move>
12 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${value}/bakta_database/${name}/${path}</value_translation> 14 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/bakta_database/${dbkey}/${path}</value_translation>
13 <value_translation type="function">abspath</value_translation> 15 <value_translation type="function">abspath</value_translation>
14 </column> 16 </column>
15 </output> 17 </output>
16 </data_table> 18 </data_table>
17 </data_manager> 19 </data_manager>