Mercurial > repos > pimarin > bedtools

annotate tool-data/all_gff.loc.sample @ 0:4cacc5b8001b draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools
author pimarin
date Thu, 23 Feb 2023 09:50:24 +0000
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4cacc5b8001b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools
pimarin
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1 #This file lists the locations and dbkeys of all the GFF files
4cacc5b8001b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools
pimarin
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2 #This file has the format (white space characters are
4cacc5b8001b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools
pimarin
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3 #TAB characters):
4cacc5b8001b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools
pimarin
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4 #
4cacc5b8001b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools
pimarin
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5 #<unique_build_id> <dbkey> <display_name> <file_path>
4cacc5b8001b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools
pimarin
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6 #
4cacc5b8001b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools
pimarin
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7 #So, all_gff.loc could look something like this:
4cacc5b8001b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools
pimarin
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8 #
4cacc5b8001b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools
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9 #apiMel3 apiMel3 Honeybee (Apis mellifera): apiMel3 /path/to/annotation/apiMel3/apiMel3.gff
4cacc5b8001b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools
pimarin
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10 #hg19canon hg19 Human (Homo sapiens): hg19 Canonical /path/to/annotation/hg19/hg19canon.gff
4cacc5b8001b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools
pimarin
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11 #hg19full hg19 Human (Homo sapiens): hg19 Representative transcripts /path/to/annotation/hg19/hg19_representative_tx.gff
4cacc5b8001b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools
pimarin
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12 #
4cacc5b8001b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools
pimarin
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13 #Your all_gff.loc file should contain an entry for each different annotation.
4cacc5b8001b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools
pimarin
parents:
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14 #So there can be multiple gff files for each build, such as with hg19 above.