view test-data/TEST_5/TEST_5.log @ 3:eea334d9988b draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit 73af464cc860250c3fa3dd433602283ab5a44f53-dirty
author pimarin
date Thu, 22 Dec 2022 15:01:43 +0000
parents
children 44fb905481f0
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parse genome sequences...
	imported: 1
	filtered & revised: 1
	plasmids: 1

start annotation...
skip tRNA prediction...
skip tmRNA prediction...
skip rRNA prediction...
skip ncRNA prediction...
skip ncRNA region prediction...
skip CRISPR array prediction...
skip CDS prediction...
skip sORF prediction...
skip gap annotation...
skip oriC/T annotation...
apply feature overlap filters...
select features and create locus tags...
selected: 0

genome statistics:
	Genome size: 1,330 bp
	Contigs/replicons: 1
	GC: 45.2 %
	N50: 1,330
	N ratio: 0.0 %
	coding density: 0.0 %

annotation summary:
	tRNAs: 0
	tmRNAs: 0
	rRNAs: 0
	ncRNAs: 0
	ncRNA regions: 0
	CRISPR arrays: 0
	CDSs: 0
	  hypotheticals: 0
	  pseudogenes: 0
	  signal peptides: 0
	sORFs: 0
	gaps: 0
	oriCs/oriVs: 0
	oriTs: 0

<<<<<<< HEAD
export annotation results to: /tmp/tmptbkng6kx/job_working_directory/000/14/working
=======
export annotation results to: /tmp/tmp4jorszj6/job_working_directory/000/14/working
>>>>>>> 195c8410c (change option for plot)
	human readable TSV...
	GFF3...
	INSDC GenBank & EMBL...
	genome sequences...
	feature nucleotide sequences...
	translated CDS sequences...
	circular genome plot...
	machine readable JSON...
	genome and annotation summary...

If you use these results please cite Bakta: https://doi.org/10.1099/mgen.0.000685
Annotation successfully finished in 0:00 [mm:ss].