Mercurial > repos > pimarin > bakta
comparison test-data/TEST_5/TEST_5.log @ 3:eea334d9988b draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit 73af464cc860250c3fa3dd433602283ab5a44f53-dirty
| author | pimarin |
|---|---|
| date | Thu, 22 Dec 2022 15:01:43 +0000 |
| parents | |
| children | 44fb905481f0 |
comparison
equal
deleted
inserted
replaced
| 2:ca9e2125c5de | 3:eea334d9988b |
|---|---|
| 1 | |
| 2 parse genome sequences... | |
| 3 imported: 1 | |
| 4 filtered & revised: 1 | |
| 5 plasmids: 1 | |
| 6 | |
| 7 start annotation... | |
| 8 skip tRNA prediction... | |
| 9 skip tmRNA prediction... | |
| 10 skip rRNA prediction... | |
| 11 skip ncRNA prediction... | |
| 12 skip ncRNA region prediction... | |
| 13 skip CRISPR array prediction... | |
| 14 skip CDS prediction... | |
| 15 skip sORF prediction... | |
| 16 skip gap annotation... | |
| 17 skip oriC/T annotation... | |
| 18 apply feature overlap filters... | |
| 19 select features and create locus tags... | |
| 20 selected: 0 | |
| 21 | |
| 22 genome statistics: | |
| 23 Genome size: 1,330 bp | |
| 24 Contigs/replicons: 1 | |
| 25 GC: 45.2 % | |
| 26 N50: 1,330 | |
| 27 N ratio: 0.0 % | |
| 28 coding density: 0.0 % | |
| 29 | |
| 30 annotation summary: | |
| 31 tRNAs: 0 | |
| 32 tmRNAs: 0 | |
| 33 rRNAs: 0 | |
| 34 ncRNAs: 0 | |
| 35 ncRNA regions: 0 | |
| 36 CRISPR arrays: 0 | |
| 37 CDSs: 0 | |
| 38 hypotheticals: 0 | |
| 39 pseudogenes: 0 | |
| 40 signal peptides: 0 | |
| 41 sORFs: 0 | |
| 42 gaps: 0 | |
| 43 oriCs/oriVs: 0 | |
| 44 oriTs: 0 | |
| 45 | |
| 46 <<<<<<< HEAD | |
| 47 export annotation results to: /tmp/tmptbkng6kx/job_working_directory/000/14/working | |
| 48 ======= | |
| 49 export annotation results to: /tmp/tmp4jorszj6/job_working_directory/000/14/working | |
| 50 >>>>>>> 195c8410c (change option for plot) | |
| 51 human readable TSV... | |
| 52 GFF3... | |
| 53 INSDC GenBank & EMBL... | |
| 54 genome sequences... | |
| 55 feature nucleotide sequences... | |
| 56 translated CDS sequences... | |
| 57 circular genome plot... | |
| 58 machine readable JSON... | |
| 59 genome and annotation summary... | |
| 60 | |
| 61 If you use these results please cite Bakta: https://doi.org/10.1099/mgen.0.000685 | |
| 62 Annotation successfully finished in 0:00 [mm:ss]. |