Mercurial > repos > pimarin > bakta
view test-data/TEST_3/TEST_3.log @ 3:eea334d9988b draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit 73af464cc860250c3fa3dd433602283ab5a44f53-dirty
| author | pimarin |
|---|---|
| date | Thu, 22 Dec 2022 15:01:43 +0000 |
| parents | ca9e2125c5de |
| children | 8c7499c6f32a |
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parse genome sequences... imported: 1 filtered & revised: 1 plasmids: 1 start annotation... skip tRNA prediction... skip tmRNA prediction... skip rRNA prediction... skip ncRNA prediction... skip ncRNA region prediction... skip CRISPR array prediction... skip CDS prediction... skip sORF prediction... skip gap annotation... skip oriC/T annotation... apply feature overlap filters... select features and create locus tags... selected: 0 genome statistics: Genome size: 1,330 bp Contigs/replicons: 1 GC: 45.2 % N50: 1,330 N ratio: 0.0 % coding density: 0.0 % annotation summary: tRNAs: 0 tmRNAs: 0 rRNAs: 0 ncRNAs: 0 ncRNA regions: 0 CRISPR arrays: 0 CDSs: 0 hypotheticals: 0 pseudogenes: 0 signal peptides: 0 sORFs: 0 gaps: 0 oriCs/oriVs: 0 oriTs: 0 export annotation results to: /tmp/tmptbkng6kx/job_working_directory/000/6/working human readable TSV... GFF3... INSDC GenBank & EMBL... genome sequences... feature nucleotide sequences... translated CDS sequences... circular genome plot... machine readable JSON... genome and annotation summary... If you use these results please cite Bakta: https://doi.org/10.1099/mgen.0.000685 Annotation successfully finished in 0:00 [mm:ss].