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comparison test-data/TEST_3/TEST_3.log @ 3:eea334d9988b draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit 73af464cc860250c3fa3dd433602283ab5a44f53-dirty
author pimarin
date Thu, 22 Dec 2022 15:01:43 +0000
parents ca9e2125c5de
children 8c7499c6f32a
comparison
equal deleted inserted replaced
2:ca9e2125c5de 3:eea334d9988b
1
1 parse genome sequences... 2 parse genome sequences...
2 imported: 1 3 imported: 1
3 filtered & revised: 1 4 filtered & revised: 1
4 plasmids: 1 5 plasmids: 1
5 6
17 apply feature overlap filters... 18 apply feature overlap filters...
18 select features and create locus tags... 19 select features and create locus tags...
19 selected: 0 20 selected: 0
20 21
21 genome statistics: 22 genome statistics:
22 Genome size: 3,306 bp 23 Genome size: 1,330 bp
23 Contigs/replicons: 1 24 Contigs/replicons: 1
24 GC: 43.4 % 25 GC: 45.2 %
25 N50: 3,306 26 N50: 1,330
26 N ratio: 0.0 % 27 N ratio: 0.0 %
27 coding density: 0.0 % 28 coding density: 0.0 %
28 29
29 annotation summary: 30 annotation summary:
30 tRNAs: 0 31 tRNAs: 0
33 ncRNAs: 0 34 ncRNAs: 0
34 ncRNA regions: 0 35 ncRNA regions: 0
35 CRISPR arrays: 0 36 CRISPR arrays: 0
36 CDSs: 0 37 CDSs: 0
37 hypotheticals: 0 38 hypotheticals: 0
39 pseudogenes: 0
38 signal peptides: 0 40 signal peptides: 0
39 sORFs: 0 41 sORFs: 0
40 gaps: 0 42 gaps: 0
41 oriCs/oriVs: 0 43 oriCs/oriVs: 0
42 oriTs: 0 44 oriTs: 0
43 45
44 export annotation results to: /tmp/tmpd2jvcl6c/job_working_directory/000/6/working 46 export annotation results to: /tmp/tmptbkng6kx/job_working_directory/000/6/working
45 human readable TSV... 47 human readable TSV...
46 GFF3... 48 GFF3...
47 INSDC GenBank & EMBL... 49 INSDC GenBank & EMBL...
48 genome sequences... 50 genome sequences...
49 feature nucleotide sequences... 51 feature nucleotide sequences...
50 translated CDS sequences... 52 translated CDS sequences...
53 circular genome plot...
51 machine readable JSON... 54 machine readable JSON...
52 genome and annotation summary... 55 genome and annotation summary...
53 56
54 If you use these results please cite Bakta: https://doi.org/10.1099/mgen.0.000685 57 If you use these results please cite Bakta: https://doi.org/10.1099/mgen.0.000685
55 Annotation successfully finished in 0:00 [mm:ss]. 58 Annotation successfully finished in 0:00 [mm:ss].