Mercurial > repos > pimarin > bakta
diff test-data/tmp/TEST_1.gbff @ 3:eea334d9988b draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit 73af464cc860250c3fa3dd433602283ab5a44f53-dirty
author | pimarin |
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date | Thu, 22 Dec 2022 15:01:43 +0000 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/tmp/TEST_1.gbff Thu Dec 22 15:01:43 2022 +0000 @@ -0,0 +1,107 @@ +<<<<<<< HEAD:tools/bakta/test-data/TEST_1/TEST_1.gbff +LOCUS contig_1 1330 bp DNA circular BCT 19-DEC-2022 +======= +<<<<<<< HEAD:tools/bakta/test-data/TEST_4/TEST_4.gbff +LOCUS p2 1330 bp DNA circular BCT 16-SEP-2022 +DEFINITION plasmid pOSAK1, complete sequence. +ACCESSION p2 +VERSION p2 +======= +LOCUS contig_1 1330 bp DNA circular BCT 21-DEC-2022 +>>>>>>> 17d4de2b8 (update bakta for plot output and to reduce number of output files):tools/bakta/test-data/tmp/TEST_1.gbff +DEFINITION plasmid unnamed1, complete sequence. +ACCESSION contig_1 +VERSION contig_1 +>>>>>>> f1bb03fb2 (update bakta for plot output and to reduce number of output files):tools/bakta/test-data/tmp/TEST_1.gbff +KEYWORDS . +SOURCE None + ORGANISM . + . +COMMENT Annotated with Bakta + Software: v1.6.1 + Database: v4.0 + DOI: 10.1099/mgen.0.000685 + URL: github.com/oschwengers/bakta + + ##Genome Annotation Summary:## +<<<<<<< HEAD:tools/bakta/test-data/tmp/TEST_1.gbff +<<<<<<< HEAD:tools/bakta/test-data/TEST_1/TEST_1.gbff + Annotation Date :: 12/19/2022, 10:20:25 +======= +<<<<<<< HEAD:tools/bakta/test-data/TEST_4/TEST_4.gbff + Annotation Date :: 09/16/2022, 07:32:50 +======= + Annotation Date :: 12/21/2022, 14:34:39 +>>>>>>> f1bb03fb2 (update bakta for plot output and to reduce number of output files):tools/bakta/test-data/tmp/TEST_1.gbff +>>>>>>> 17d4de2b8 (update bakta for plot output and to reduce number of output files):tools/bakta/test-data/tmp/TEST_1.gbff +======= + Annotation Date :: 12/21/2022, 19:53:31 +>>>>>>> 195c8410c (change option for plot):tools/bakta/test-data/TEST_1/TEST_1.gbff + Annotation Pipeline :: Bakta + Annotation Software version :: v1.6.1 + Annotation Database version :: v4.0 + CDSs :: 2 + tRNAs :: 0 + tmRNAs :: 0 + rRNAs :: 0 + ncRNAs :: 0 + regulatory ncRNAs :: 0 + CRISPR Arrays :: 0 + oriCs/oriVs :: 0 + oriTs :: 0 + gaps :: 0 + pseudogenes :: 0 +FEATURES Location/Qualifiers + source 1..1330 + /mol_type="genomic DNA" + /plasmid="unnamed1" + gene 413..736 + /locus_tag="IHHALP_00005" + CDS 413..736 + /product="hypothetical protein" + /locus_tag="IHHALP_00005" + /protein_id="gnl|Bakta|IHHALP_00005" + /translation="MTKRSGSNTRRRAISRPVRLTAEEDQEIRKRAAECGKTVSGFLRA + AALGKKVNSLTDDRVLKEVMRLGALQKKLFIDGKRVGDREYAEVLIAITEYHRALLSRL + MAD" + /codon_start=1 + /transl_table=11 + /inference="ab initio prediction:Prodigal:2.6" + gene complement(join(971..1330,1..141)) + /locus_tag="IHHALP_00010" + CDS complement(join(971..1330,1..141)) + /product="hypothetical protein" + /locus_tag="IHHALP_00010" + /protein_id="gnl|Bakta|IHHALP_00010" + /translation="MNKQQQTALNMAGFIKSQSLTLLEKLDALDADEQATMCEKLHELA + EEQIEAIKNKDKTLFIVYATDIYSPSEFFSKIESDLKKKKSKGDVFFDLIIPNGGKKDR + YVYTSFNGEKFSSYTLNKVTKTDEYNDLSELSASFFKKNFDKINVNLLSKATSFALKKG + IPI" + /codon_start=1 + /transl_table=11 + /inference="ab initio prediction:Prodigal:2.6" +ORIGIN + 1 ttcttctgcg agttcgtgca gcttctcaca catggtggcc tgctcgtcag catcgagtgc + 61 gtccagtttt tcgagcagcg tcaggctctg gctttttatg aatcccgcca tgttgagtgc + 121 agtttgctgc tgcttgttca tctttctgtt ttctccgttc tgtctgtcat ctgcgtcgtg + 181 tgattatatc gcgcaccact tttcgaccgt cttaccgccg gtattctgcc gacggacatt + 241 tcagtcagac aacactgtca ctgccaaaaa acagcagtgc tttgttggta attcgaactt + 301 gcagacagga caggatgtgc aattgttata ccgcgcatac atgcacgcta ttacaattac + 361 cctggtcagg gcttcgcccc gacaccccat gtcagatacg gagccatgtt ttatgacaaa + 421 acgaagtgga agtaatacgc gcaggcgggc tatcagtcgc cctgttcgtc tgacggcaga + 481 agaagaccag gaaatcagaa aaagggctgc tgaatgcggc aagaccgttt ctggtttttt + 541 acgggcggca gctctcggta agaaagttaa ctcactgact gatgaccggg tgctgaaaga + 601 agttatgcga ctgggggcgt tgcagaaaaa actctttatc gacggcaagc gtgtcgggga + 661 cagagagtat gcggaggtgc tgatcgctat tacggagtat caccgtgccc tgttatccag + 721 gcttatggca gattagcttc ccggagagaa actgtcgaaa acagacggta tgaacgccgt + 781 aagcccccaa accgatcgcc attcactttc atgcatagct atgcagtgag ctgaaagcga + 841 tcctgacgca tttttccggt ttaccccggg gaaaacatct ctttttgcgg tgtctgcgtc + 901 agaatcgcgt tcagcgcgtt ttggcggtgc gcgtaatgag acgttatggt aaatgtcttc + 961 tggcttgata ttatattgga atgccttttt tcaaagcaaa tgatgtggct ttggatagaa + 1021 ggtttacgtt gatcttatca aagttttttt taaagaacga agccgagagc tcagataaat + 1081 cattatattc atcagttttc gtaactttgt ttaatgtgta acttgaaaac ttctcgccat + 1141 taaatgacgt atagacgtaa cgatcttttt ttccaccgtt aggaattatt aaatcaaaaa + 1201 aaacatcacc cttgcttttc tttttcttca agtcggattc gatttttgag aaaaattcgc + 1261 tcgggctata aatatcagta gcatagacaa taaataaagt tttatcttta ttttttattg + 1321 cttctatttg +//