Mercurial > repos > pimarin > bakta
diff test-data/TEST_1/TEST_1.embl @ 0:4d315de96666 draft
"planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/bakta commit bf30715c881a622947d3d099d7a22e323e2ceef3-dirty"
| author | pimarin |
|---|---|
| date | Wed, 18 May 2022 11:13:45 +0000 |
| parents | |
| children | ca9e2125c5de |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/TEST_1/TEST_1.embl Wed May 18 11:13:45 2022 +0000 @@ -0,0 +1,137 @@ +ID contig_1; ; circular; DNA; ; PRO; 3306 BP. +XX +AC contig_1; +XX +DE plasmid unnamed1, complete sequence +XX +OS . +OC . +XX +CC Annotated with Bakta +CC Software: v1.4.0 +CC Database: v3.0 +CC DOI: 10.1099/mgen.0.000685 +CC URL: github.com/oschwengers/bakta +CC +CC ##Genome Annotation Summary:## +CC Annotation Date :: 05/05/2022, 15:12:51 +CC Annotation Pipeline :: Bakta +CC Annotation Software version :: v1.4.0 +CC Annotation Database version :: v3.0 +CC CDSs :: 3 +CC tRNAs :: 0 +CC tmRNAs :: 0 +CC rRNAs :: 0 +CC ncRNAs :: 0 +CC regulatory ncRNAs :: 0 +CC CRISPR Arrays :: 0 +CC oriCs/oriVs :: 0 +CC oriTs :: 0 +CC gaps :: 0 +XX +FH Key Location/Qualifiers +FH +FT source 1..3306 +FT /mol_type="genomic DNA" +FT /plasmid="unnamed1" +FT gene <2..736 +FT /locus_tag="DOGAIA_00005" +FT CDS <2..736 +FT /product="hypothetical protein" +FT /locus_tag="DOGAIA_00005" +FT /translation="SSASSCSFSHMVACSSASSASSFSSSVRLWLFMNPAMLSAVCCCL +FT FIFLFSPFCLSSASCDYIAHHFSTVLPPVFCRRTFQSDNTVTAKKQQCFVGNSNLQTGQ +FT DVQLLYRAYMHAITITLVRASPRHPMSDTEPCFMTKRSGSNTRRRAISRPVRLTAEEDQ +FT EIRKRAAECGKTVSGFLRAAALGKKVNSLTDDRVLKEVMRLGALQKKLFIDGKRVGDRE +FT YAEVLIAITEYHRALLSRLMAD" +FT /codon_start=1 +FT /transl_table=11 +FT /protein_id="gnl|Bakta|DOGAIA_00005" +FT /inference="ab initio prediction:Prodigal:2.6" +FT gene complement(971..1351) +FT /locus_tag="DOGAIA_00010" +FT CDS complement(971..1351) +FT /product="hypothetical protein" +FT /locus_tag="DOGAIA_00010" +FT /translation="MKKDKKYQIEAIKNKDKTLFIVYATDIYSPSEFFSKIESDLKKKK +FT SKGDVFFDLIIPNGGKKDRYVYTSFNGEKFSSYTLNKVTKTDEYNDLSELSASFFKKNF +FT DKINVNLLSKATSFALKKGIPI" +FT /codon_start=1 +FT /transl_table=11 +FT /protein_id="gnl|Bakta|DOGAIA_00010" +FT /inference="ab initio prediction:Prodigal:2.6" +FT gene complement(1348..2388) +FT /locus_tag="DOGAIA_00015" +FT CDS complement(1348..2388) +FT /product="hypothetical protein" +FT /locus_tag="DOGAIA_00015" +FT /translation="MAQNPFKALNINIDKIESALTQNGVTNYSSNVKNERETHISGTYK +FT GIDFLIKLMPSGGNTTIGRASGQNNTYFDEIALIIKENCLYSDTKNFEYTIPKFSDDDR +FT ANLFEFLSEEGITITEDNNNDPNCKHQYIMTTSNGDRVRAKIYKRGSIQFQGKYLQIAS +FT LINDFMCSILNMKEIVEQKNKEFNVDIKKETIESELHSKLPKSIDKIHEDIKKQLSCSL +FT IMKKIDVEMEDYSTYCFSALRAIEGFIYQILNDVCNPSSSKNLGEYFTENKPKYIIREI +FT HQETINGEIAEVLCECYTYWHENRHGLFHMKPGIADTKTINKLESIAIIDTVCQLIDGG +FT VARLKL" +FT /codon_start=1 +FT /transl_table=11 +FT /protein_id="gnl|Bakta|DOGAIA_00015" +FT /inference="ab initio prediction:Prodigal:2.6" +XX +SQ Sequence 3306 BP; 797 A; 692 C; 743 G; 1074 T; 0 other; + ttcttctgcg agttcgtgca gcttctcaca catggtggcc tgctcgtcag catcgagtgc 60 + gtccagtttt tcgagcagcg tcaggctctg gctttttatg aatcccgcca tgttgagtgc 120 + agtttgctgc tgcttgttca tctttctgtt ttctccgttc tgtctgtcat ctgcgtcgtg 180 + tgattatatc gcgcaccact tttcgaccgt cttaccgccg gtattctgcc gacggacatt 240 + tcagtcagac aacactgtca ctgccaaaaa acagcagtgc tttgttggta attcgaactt 300 + gcagacagga caggatgtgc aattgttata ccgcgcatac atgcacgcta ttacaattac 360 + cctggtcagg gcttcgcccc gacaccccat gtcagatacg gagccatgtt ttatgacaaa 420 + acgaagtgga agtaatacgc gcaggcgggc tatcagtcgc cctgttcgtc tgacggcaga 480 + agaagaccag gaaatcagaa aaagggctgc tgaatgcggc aagaccgttt ctggtttttt 540 + acgggcggca gctctcggta agaaagttaa ctcactgact gatgaccggg tgctgaaaga 600 + agttatgcga ctgggggcgt tgcagaaaaa actctttatc gacggcaagc gtgtcgggga 660 + cagagagtat gcggaggtgc tgatcgctat tacggagtat caccgtgccc tgttatccag 720 + gcttatggca gattagcttc ccggagagaa actgtcgaaa acagacggta tgaacgccgt 780 + aagcccccaa accgatcgcc attcactttc atgcatagct atgcagtgag ctgaaagcga 840 + tcctgacgca tttttccggt ttaccccggg gaaaacatct ctttttgcgg tgtctgcgtc 900 + agaatcgcgt tcagcgcgtt ttggcggtgc gcgtaatgag acgttatggt aaatgtcttc 960 + tggcttgata ttatattgga atgccttttt tcaaagcaaa tgatgtggct ttggatagaa 1020 + ggtttacgtt gatcttatca aagttttttt taaagaacga agccgagagc tcagataaat 1080 + cattatattc atcagttttc gtaactttgt ttaatgtgta acttgaaaac ttctcgccat 1140 + taaatgacgt atagacgtaa cgatcttttt ttccaccgtt aggaattatt aaatcaaaaa 1200 + aaacatcacc cttgcttttc tttttcttca agtcggattc gatttttgag aaaaattcgc 1260 + tcgggctata aatatcagta gcatagacaa taaataaagt tttatcttta ttttttattg 1320 + cttctatttg atatttttta tcttttttca taatttcaac ctagctacgc caccatctat 1380 + taattggcaa acggtatcga tgattgcgat tgattctaat ttgttaattg tcttcgtgtc 1440 + agctattcct ggtttcatat gaaacaaacc atgcctgttc tcatgccagt aagtgtagca 1500 + ttcacacaaa acttccgcta tttcaccatt tatagtttct tggtgtattt ctctgattat 1560 + atatttgggt ttgttttcag tgaagtattc gccaaggttc tttgatgatg atggattgca 1620 + aacatcatta agtatttgat atataaagcc ttctatggct cttaatgcag agaagcagta 1680 + tgttgagtaa tcttccattt cgacatctat ttttttcatt attagcgagc atgatagctg 1740 + ttttttgata tcttcatgga ttttatcgat gctttttggt agtttgctat gcaactcgga 1800 + ctcaatagtt tcttttttta tgtcaacatt aaattcttta tttttttgtt cgacaatctc 1860 + tttcatgttt agtattgagc acatgaaatc gttaatcaaa ctcgcgattt gaaggtattt 1920 + tccttggaat tgaatagagc cgcgcttgta aatttttgcc ctgaccctgt caccattgct 1980 + ggtggtcata atatattggt gtttacaatt aggatcgtta ttattatctt ctgttattgt 2040 + tatcccctct tcagaaagaa attcaaatag atttgccctg tcatcatcac tgaattttgg 2100 + aatggtgtat tcaaagttct ttgtgtctga atacaaacag ttttctttta taatcaaggc 2160 + gatttcatca aagtaagtgt tattttgccc agacgctctt ccgatagtgg tatttccgcc 2220 + tgatggcatt agttttatta agaagtctat tcctttatat gtgccagata tgtgagtttc 2280 + tctttcgttt tttacattag aggaatagtt tgtgacgcca ttctgcgtca gagcagactc 2340 + aatcttgtca atattgatat ttagtgcttt aaacgggttc tgtgccattg ggtcaatccg 2400 + ttgttttttt tgaatatgta cagatcttgt ttttttgtca acggaatagc tgttcgttga 2460 + cttgatagac cgattgattc atcatctcat aaataaagaa aaaccaccgc taccaacggt 2520 + ggttttctca aggttcgctg agctaccaac tctttgaacc aaggtaactg gcttggagga 2580 + gcgcagtcac caaaatctgt tctttcagtt tagccttaac aggtgcataa cttcaagaca 2640 + aactcctcta aatcagttac caatggctgc tgccagtggc gataagtcgt gtcttaccgg 2700 + gttggactca agacgatagt taccggataa ggcgcagcgg tcgggctgaa cggggggttc 2760 + gtgcacacag cccagcttgg agcgaacgac ctacaccgaa ctgagatacc aacagcgtga 2820 + gctatgagaa agcgccacgc ttcccgaagg gagaaaggcg gacaggtatc cggtaagtgg 2880 + cagggtcgga acaggagagc gcacgaggga gcttccgggg ggaaacgcct ggtatcttta 2940 + tagtcctgtc gggtttcgcc acctctggct tgagcgtcga tttttgtgat gctcgtcagg 3000 + ggggcggagc ctatggaaaa acgcctgcgg tgctggcttc ttccggtgct ttgctttttg 3060 + ctcacatgtt ctttccggct ttatcccctg attctgtgga taaccgtatt accgcctttg 3120 + agtgagctga caccgctcgc cgcagtcgaa cgaccgagcg tagcgagtca gtgagcgagg 3180 + aagcggaaga gcgccttatg tgacattttc tccttacgct ctgttgtgcc gttcggcatc 3240 + ctgccctgag cgttatatct ctgtgctatt ttctacttca aagcgtgtct gtatgctgtt 3300 + ctggag 3306 +//