view test-data/TEST_1/TEST_1.embl @ 2:ca9e2125c5de draft

"planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/bakta commit fe1cdf884df206d842be4f0768acb06b0bbcf56f"
author pimarin
date Wed, 17 Aug 2022 10:29:37 +0000
parents 4d315de96666
children
line wrap: on
line source

ID   contig_1; ; circular; DNA; ; PRO; 3306 BP.
XX
AC   contig_1;
XX
DE   plasmid unnamed1, complete sequence
XX
OS   .
OC   .
XX
CC   Annotated with Bakta
CC   Software: v1.4.2
CC   Database: v3.0
CC   DOI: 10.1099/mgen.0.000685
CC   URL: github.com/oschwengers/bakta
CC   
CC   ##Genome Annotation Summary:##
CC   Annotation Date                :: 08/17/2022, 09:35:24
CC   Annotation Pipeline            :: Bakta
CC   Annotation Software version    ::  v1.4.2
CC   Annotation Database version    ::  v3.0
CC   CDSs                           ::     3
CC   tRNAs                          ::     0
CC   tmRNAs                         ::     0
CC   rRNAs                          ::     0
CC   ncRNAs                         ::     0
CC   regulatory ncRNAs              ::     0
CC   CRISPR Arrays                  ::     0
CC   oriCs/oriVs                    ::     0
CC   oriTs                          ::     0
CC   gaps                           ::     0
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..3306
FT                   /mol_type="genomic DNA"
FT                   /plasmid="unnamed1"
FT   gene            <2..736
FT                   /locus_tag="DOGAIA_00005"
FT   CDS             <2..736
FT                   /product="hypothetical protein"
FT                   /locus_tag="DOGAIA_00005"
FT                   /translation="SSASSCSFSHMVACSSASSASSFSSSVRLWLFMNPAMLSAVCCCL
FT                   FIFLFSPFCLSSASCDYIAHHFSTVLPPVFCRRTFQSDNTVTAKKQQCFVGNSNLQTGQ
FT                   DVQLLYRAYMHAITITLVRASPRHPMSDTEPCFMTKRSGSNTRRRAISRPVRLTAEEDQ
FT                   EIRKRAAECGKTVSGFLRAAALGKKVNSLTDDRVLKEVMRLGALQKKLFIDGKRVGDRE
FT                   YAEVLIAITEYHRALLSRLMAD"
FT                   /codon_start=1
FT                   /transl_table=11
FT                   /protein_id="gnl|Bakta|DOGAIA_00005"
FT                   /inference="ab initio prediction:Prodigal:2.6"
FT   gene            complement(971..1351)
FT                   /locus_tag="DOGAIA_00010"
FT   CDS             complement(971..1351)
FT                   /product="hypothetical protein"
FT                   /locus_tag="DOGAIA_00010"
FT                   /translation="MKKDKKYQIEAIKNKDKTLFIVYATDIYSPSEFFSKIESDLKKKK
FT                   SKGDVFFDLIIPNGGKKDRYVYTSFNGEKFSSYTLNKVTKTDEYNDLSELSASFFKKNF
FT                   DKINVNLLSKATSFALKKGIPI"
FT                   /codon_start=1
FT                   /transl_table=11
FT                   /protein_id="gnl|Bakta|DOGAIA_00010"
FT                   /inference="ab initio prediction:Prodigal:2.6"
FT   gene            complement(1348..2388)
FT                   /locus_tag="DOGAIA_00015"
FT   CDS             complement(1348..2388)
FT                   /product="hypothetical protein"
FT                   /locus_tag="DOGAIA_00015"
FT                   /translation="MAQNPFKALNINIDKIESALTQNGVTNYSSNVKNERETHISGTYK
FT                   GIDFLIKLMPSGGNTTIGRASGQNNTYFDEIALIIKENCLYSDTKNFEYTIPKFSDDDR
FT                   ANLFEFLSEEGITITEDNNNDPNCKHQYIMTTSNGDRVRAKIYKRGSIQFQGKYLQIAS
FT                   LINDFMCSILNMKEIVEQKNKEFNVDIKKETIESELHSKLPKSIDKIHEDIKKQLSCSL
FT                   IMKKIDVEMEDYSTYCFSALRAIEGFIYQILNDVCNPSSSKNLGEYFTENKPKYIIREI
FT                   HQETINGEIAEVLCECYTYWHENRHGLFHMKPGIADTKTINKLESIAIIDTVCQLIDGG
FT                   VARLKL"
FT                   /codon_start=1
FT                   /transl_table=11
FT                   /protein_id="gnl|Bakta|DOGAIA_00015"
FT                   /inference="ab initio prediction:Prodigal:2.6"
XX
SQ   Sequence 3306 BP; 797 A; 692 C; 743 G; 1074 T; 0 other;
     ttcttctgcg agttcgtgca gcttctcaca catggtggcc tgctcgtcag catcgagtgc        60
     gtccagtttt tcgagcagcg tcaggctctg gctttttatg aatcccgcca tgttgagtgc       120
     agtttgctgc tgcttgttca tctttctgtt ttctccgttc tgtctgtcat ctgcgtcgtg       180
     tgattatatc gcgcaccact tttcgaccgt cttaccgccg gtattctgcc gacggacatt       240
     tcagtcagac aacactgtca ctgccaaaaa acagcagtgc tttgttggta attcgaactt       300
     gcagacagga caggatgtgc aattgttata ccgcgcatac atgcacgcta ttacaattac       360
     cctggtcagg gcttcgcccc gacaccccat gtcagatacg gagccatgtt ttatgacaaa       420
     acgaagtgga agtaatacgc gcaggcgggc tatcagtcgc cctgttcgtc tgacggcaga       480
     agaagaccag gaaatcagaa aaagggctgc tgaatgcggc aagaccgttt ctggtttttt       540
     acgggcggca gctctcggta agaaagttaa ctcactgact gatgaccggg tgctgaaaga       600
     agttatgcga ctgggggcgt tgcagaaaaa actctttatc gacggcaagc gtgtcgggga       660
     cagagagtat gcggaggtgc tgatcgctat tacggagtat caccgtgccc tgttatccag       720
     gcttatggca gattagcttc ccggagagaa actgtcgaaa acagacggta tgaacgccgt       780
     aagcccccaa accgatcgcc attcactttc atgcatagct atgcagtgag ctgaaagcga       840
     tcctgacgca tttttccggt ttaccccggg gaaaacatct ctttttgcgg tgtctgcgtc       900
     agaatcgcgt tcagcgcgtt ttggcggtgc gcgtaatgag acgttatggt aaatgtcttc       960
     tggcttgata ttatattgga atgccttttt tcaaagcaaa tgatgtggct ttggatagaa      1020
     ggtttacgtt gatcttatca aagttttttt taaagaacga agccgagagc tcagataaat      1080
     cattatattc atcagttttc gtaactttgt ttaatgtgta acttgaaaac ttctcgccat      1140
     taaatgacgt atagacgtaa cgatcttttt ttccaccgtt aggaattatt aaatcaaaaa      1200
     aaacatcacc cttgcttttc tttttcttca agtcggattc gatttttgag aaaaattcgc      1260
     tcgggctata aatatcagta gcatagacaa taaataaagt tttatcttta ttttttattg      1320
     cttctatttg atatttttta tcttttttca taatttcaac ctagctacgc caccatctat      1380
     taattggcaa acggtatcga tgattgcgat tgattctaat ttgttaattg tcttcgtgtc      1440
     agctattcct ggtttcatat gaaacaaacc atgcctgttc tcatgccagt aagtgtagca      1500
     ttcacacaaa acttccgcta tttcaccatt tatagtttct tggtgtattt ctctgattat      1560
     atatttgggt ttgttttcag tgaagtattc gccaaggttc tttgatgatg atggattgca      1620
     aacatcatta agtatttgat atataaagcc ttctatggct cttaatgcag agaagcagta      1680
     tgttgagtaa tcttccattt cgacatctat ttttttcatt attagcgagc atgatagctg      1740
     ttttttgata tcttcatgga ttttatcgat gctttttggt agtttgctat gcaactcgga      1800
     ctcaatagtt tcttttttta tgtcaacatt aaattcttta tttttttgtt cgacaatctc      1860
     tttcatgttt agtattgagc acatgaaatc gttaatcaaa ctcgcgattt gaaggtattt      1920
     tccttggaat tgaatagagc cgcgcttgta aatttttgcc ctgaccctgt caccattgct      1980
     ggtggtcata atatattggt gtttacaatt aggatcgtta ttattatctt ctgttattgt      2040
     tatcccctct tcagaaagaa attcaaatag atttgccctg tcatcatcac tgaattttgg      2100
     aatggtgtat tcaaagttct ttgtgtctga atacaaacag ttttctttta taatcaaggc      2160
     gatttcatca aagtaagtgt tattttgccc agacgctctt ccgatagtgg tatttccgcc      2220
     tgatggcatt agttttatta agaagtctat tcctttatat gtgccagata tgtgagtttc      2280
     tctttcgttt tttacattag aggaatagtt tgtgacgcca ttctgcgtca gagcagactc      2340
     aatcttgtca atattgatat ttagtgcttt aaacgggttc tgtgccattg ggtcaatccg      2400
     ttgttttttt tgaatatgta cagatcttgt ttttttgtca acggaatagc tgttcgttga      2460
     cttgatagac cgattgattc atcatctcat aaataaagaa aaaccaccgc taccaacggt      2520
     ggttttctca aggttcgctg agctaccaac tctttgaacc aaggtaactg gcttggagga      2580
     gcgcagtcac caaaatctgt tctttcagtt tagccttaac aggtgcataa cttcaagaca      2640
     aactcctcta aatcagttac caatggctgc tgccagtggc gataagtcgt gtcttaccgg      2700
     gttggactca agacgatagt taccggataa ggcgcagcgg tcgggctgaa cggggggttc      2760
     gtgcacacag cccagcttgg agcgaacgac ctacaccgaa ctgagatacc aacagcgtga      2820
     gctatgagaa agcgccacgc ttcccgaagg gagaaaggcg gacaggtatc cggtaagtgg      2880
     cagggtcgga acaggagagc gcacgaggga gcttccgggg ggaaacgcct ggtatcttta      2940
     tagtcctgtc gggtttcgcc acctctggct tgagcgtcga tttttgtgat gctcgtcagg      3000
     ggggcggagc ctatggaaaa acgcctgcgg tgctggcttc ttccggtgct ttgctttttg      3060
     ctcacatgtt ctttccggct ttatcccctg attctgtgga taaccgtatt accgcctttg      3120
     agtgagctga caccgctcgc cgcagtcgaa cgaccgagcg tagcgagtca gtgagcgagg      3180
     aagcggaaga gcgccttatg tgacattttc tccttacgct ctgttgtgcc gttcggcatc      3240
     ctgccctgag cgttatatct ctgtgctatt ttctacttca aagcgtgtct gtatgctgtt      3300
     ctggag                                                                 3306
//