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comparison test-data/TEST_4/TEST_4.gbff @ 3:eea334d9988b draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit 73af464cc860250c3fa3dd433602283ab5a44f53-dirty
author pimarin
date Thu, 22 Dec 2022 15:01:43 +0000
parents ca9e2125c5de
children 8c7499c6f32a
comparison
equal deleted inserted replaced
2:ca9e2125c5de 3:eea334d9988b
1 LOCUS p2 3306 bp DNA circular BCT 17-AUG-2022 1 LOCUS p2 1330 bp DNA circular BCT 19-DEC-2022
2 DEFINITION plasmid pOSAK1, complete sequence. 2 DEFINITION plasmid pOSAK1, complete sequence.
3 ACCESSION p2 3 ACCESSION p2
4 VERSION p2 4 VERSION p2
5 KEYWORDS . 5 KEYWORDS .
6 SOURCE None 6 SOURCE None
7 ORGANISM . 7 ORGANISM .
8 . 8 .
9 COMMENT Annotated with Bakta 9 COMMENT Annotated with Bakta
10 Software: v1.4.2 10 Software: v1.6.1
11 Database: v3.0 11 Database: v4.0
12 DOI: 10.1099/mgen.0.000685 12 DOI: 10.1099/mgen.0.000685
13 URL: github.com/oschwengers/bakta 13 URL: github.com/oschwengers/bakta
14 14
15 ##Genome Annotation Summary:## 15 ##Genome Annotation Summary:##
16 Annotation Date :: 08/17/2022, 09:36:22 16 Annotation Date :: 12/19/2022, 10:21:31
17 Annotation Pipeline :: Bakta 17 Annotation Pipeline :: Bakta
18 Annotation Software version :: v1.4.2 18 Annotation Software version :: v1.6.1
19 Annotation Database version :: v3.0 19 Annotation Database version :: v4.0
20 CDSs :: 3 20 CDSs :: 2
21 tRNAs :: 0 21 tRNAs :: 0
22 tmRNAs :: 0 22 tmRNAs :: 0
23 rRNAs :: 0 23 rRNAs :: 0
24 ncRNAs :: 0 24 ncRNAs :: 0
25 regulatory ncRNAs :: 0 25 regulatory ncRNAs :: 0
26 CRISPR Arrays :: 0 26 CRISPR Arrays :: 0
27 oriCs/oriVs :: 0 27 oriCs/oriVs :: 0
28 oriTs :: 0 28 oriTs :: 0
29 gaps :: 0 29 gaps :: 0
30 pseudogenes :: 0
30 FEATURES Location/Qualifiers 31 FEATURES Location/Qualifiers
31 source 1..3306 32 source 1..1330
32 /mol_type="genomic DNA" 33 /mol_type="genomic DNA"
33 /plasmid="pOSAK1" 34 /plasmid="pOSAK1"
34 gene <2..736 35 gene 413..736
35 /locus_tag="DOGAIA_00005" 36 /locus_tag="IHHALP_00005"
36 CDS <2..736 37 CDS 413..736
37 /product="hypothetical protein" 38 /product="hypothetical protein"
38 /locus_tag="DOGAIA_00005" 39 /locus_tag="IHHALP_00005"
39 /translation="SSASSCSFSHMVACSSASSASSFSSSVRLWLFMNPAMLSAVCCCL 40 /protein_id="gnl|Bakta|IHHALP_00005"
40 FIFLFSPFCLSSASCDYIAHHFSTVLPPVFCRRTFQSDNTVTAKKQQCFVGNSNLQTGQ 41 /translation="MTKRSGSNTRRRAISRPVRLTAEEDQEIRKRAAECGKTVSGFLRA
41 DVQLLYRAYMHAITITLVRASPRHPMSDTEPCFMTKRSGSNTRRRAISRPVRLTAEEDQ 42 AALGKKVNSLTDDRVLKEVMRLGALQKKLFIDGKRVGDREYAEVLIAITEYHRALLSRL
42 EIRKRAAECGKTVSGFLRAAALGKKVNSLTDDRVLKEVMRLGALQKKLFIDGKRVGDRE 43 MAD"
43 YAEVLIAITEYHRALLSRLMAD"
44 /codon_start=1 44 /codon_start=1
45 /transl_table=4 45 /transl_table=4
46 /protein_id="gnl|Bakta|DOGAIA_00005"
47 /inference="ab initio prediction:Prodigal:2.6" 46 /inference="ab initio prediction:Prodigal:2.6"
48 gene complement(971..1351) 47 gene complement(join(971..1330,1..141))
49 /locus_tag="DOGAIA_00010" 48 /locus_tag="IHHALP_00010"
50 CDS complement(971..1351) 49 CDS complement(join(971..1330,1..141))
51 /product="hypothetical protein" 50 /product="hypothetical protein"
52 /locus_tag="DOGAIA_00010" 51 /locus_tag="IHHALP_00010"
53 /translation="MKKDKKYQIEAIKNKDKTLFIVYATDIYSPSEFFSKIESDLKKKK 52 /protein_id="gnl|Bakta|IHHALP_00010"
54 SKGDVFFDLIIPNGGKKDRYVYTSFNGEKFSSYTLNKVTKTDEYNDLSELSASFFKKNF 53 /translation="MNKQQQTALNMAGFIKSQSLTLLEKLDALDADEQATMCEKLHELA
55 DKINVNLLSKATSFALKKGIPI" 54 EEQIEAIKNKDKTLFIVYATDIYSPSEFFSKIESDLKKKKSKGDVFFDLIIPNGGKKDR
55 YVYTSFNGEKFSSYTLNKVTKTDEYNDLSELSASFFKKNFDKINVNLLSKATSFALKKG
56 IPI"
56 /codon_start=1 57 /codon_start=1
57 /transl_table=4 58 /transl_table=4
58 /protein_id="gnl|Bakta|DOGAIA_00010"
59 /inference="ab initio prediction:Prodigal:2.6" 59 /inference="ab initio prediction:Prodigal:2.6"
60 gene complement(1348..2388)
61 /locus_tag="DOGAIA_00015"
62 /gene="mock1"
63 CDS complement(1348..2388)
64 /note="USERDB:MOCK1"
65 /product="mock hypothetical user protein 1"
66 /locus_tag="DOGAIA_00015"
67 /translation="MAQNPFKALNINIDKIESALTQNGVTNYSSNVKNERETHISGTYK
68 GIDFLIKLMPSGGNTTIGRASGQNNTYFDEIALIIKENCLYSDTKNFEYTIPKFSDDDR
69 ANLFEFLSEEGITITEDNNNDPNCKHQYIMTTSNGDRVRAKIYKRGSIQFQGKYLQIAS
70 LINDFMCSILNMKEIVEQKNKEFNVDIKKETIESELHSKLPKSIDKIHEDIKKQLSCSL
71 IMKKIDVEMEDYSTYCFSALRAIEGFIYQILNDVCNPSSSKNLGEYFTENKPKYIIREI
72 HQETINGEIAEVLCECYTYWHENRHGLFHMKPGIADTKTINKLESIAIIDTVCQLIDGG
73 VARLKL"
74 /codon_start=1
75 /transl_table=4
76 /protein_id="gnl|Bakta|DOGAIA_00015"
77 /inference="ab initio prediction:Prodigal:2.6"
78 /EC_number="0.0.0.0"
79 /gene="mock1"
80 ORIGIN 60 ORIGIN
81 1 ttcttctgcg agttcgtgca gcttctcaca catggtggcc tgctcgtcag catcgagtgc 61 1 ttcttctgcg agttcgtgca gcttctcaca catggtggcc tgctcgtcag catcgagtgc
82 61 gtccagtttt tcgagcagcg tcaggctctg gctttttatg aatcccgcca tgttgagtgc 62 61 gtccagtttt tcgagcagcg tcaggctctg gctttttatg aatcccgcca tgttgagtgc
83 121 agtttgctgc tgcttgttca tctttctgtt ttctccgttc tgtctgtcat ctgcgtcgtg 63 121 agtttgctgc tgcttgttca tctttctgtt ttctccgttc tgtctgtcat ctgcgtcgtg
84 181 tgattatatc gcgcaccact tttcgaccgt cttaccgccg gtattctgcc gacggacatt 64 181 tgattatatc gcgcaccact tttcgaccgt cttaccgccg gtattctgcc gacggacatt
98 1021 ggtttacgtt gatcttatca aagttttttt taaagaacga agccgagagc tcagataaat 78 1021 ggtttacgtt gatcttatca aagttttttt taaagaacga agccgagagc tcagataaat
99 1081 cattatattc atcagttttc gtaactttgt ttaatgtgta acttgaaaac ttctcgccat 79 1081 cattatattc atcagttttc gtaactttgt ttaatgtgta acttgaaaac ttctcgccat
100 1141 taaatgacgt atagacgtaa cgatcttttt ttccaccgtt aggaattatt aaatcaaaaa 80 1141 taaatgacgt atagacgtaa cgatcttttt ttccaccgtt aggaattatt aaatcaaaaa
101 1201 aaacatcacc cttgcttttc tttttcttca agtcggattc gatttttgag aaaaattcgc 81 1201 aaacatcacc cttgcttttc tttttcttca agtcggattc gatttttgag aaaaattcgc
102 1261 tcgggctata aatatcagta gcatagacaa taaataaagt tttatcttta ttttttattg 82 1261 tcgggctata aatatcagta gcatagacaa taaataaagt tttatcttta ttttttattg
103 1321 cttctatttg atatttttta tcttttttca taatttcaac ctagctacgc caccatctat 83 1321 cttctatttg
104 1381 taattggcaa acggtatcga tgattgcgat tgattctaat ttgttaattg tcttcgtgtc
105 1441 agctattcct ggtttcatat gaaacaaacc atgcctgttc tcatgccagt aagtgtagca
106 1501 ttcacacaaa acttccgcta tttcaccatt tatagtttct tggtgtattt ctctgattat
107 1561 atatttgggt ttgttttcag tgaagtattc gccaaggttc tttgatgatg atggattgca
108 1621 aacatcatta agtatttgat atataaagcc ttctatggct cttaatgcag agaagcagta
109 1681 tgttgagtaa tcttccattt cgacatctat ttttttcatt attagcgagc atgatagctg
110 1741 ttttttgata tcttcatgga ttttatcgat gctttttggt agtttgctat gcaactcgga
111 1801 ctcaatagtt tcttttttta tgtcaacatt aaattcttta tttttttgtt cgacaatctc
112 1861 tttcatgttt agtattgagc acatgaaatc gttaatcaaa ctcgcgattt gaaggtattt
113 1921 tccttggaat tgaatagagc cgcgcttgta aatttttgcc ctgaccctgt caccattgct
114 1981 ggtggtcata atatattggt gtttacaatt aggatcgtta ttattatctt ctgttattgt
115 2041 tatcccctct tcagaaagaa attcaaatag atttgccctg tcatcatcac tgaattttgg
116 2101 aatggtgtat tcaaagttct ttgtgtctga atacaaacag ttttctttta taatcaaggc
117 2161 gatttcatca aagtaagtgt tattttgccc agacgctctt ccgatagtgg tatttccgcc
118 2221 tgatggcatt agttttatta agaagtctat tcctttatat gtgccagata tgtgagtttc
119 2281 tctttcgttt tttacattag aggaatagtt tgtgacgcca ttctgcgtca gagcagactc
120 2341 aatcttgtca atattgatat ttagtgcttt aaacgggttc tgtgccattg ggtcaatccg
121 2401 ttgttttttt tgaatatgta cagatcttgt ttttttgtca acggaatagc tgttcgttga
122 2461 cttgatagac cgattgattc atcatctcat aaataaagaa aaaccaccgc taccaacggt
123 2521 ggttttctca aggttcgctg agctaccaac tctttgaacc aaggtaactg gcttggagga
124 2581 gcgcagtcac caaaatctgt tctttcagtt tagccttaac aggtgcataa cttcaagaca
125 2641 aactcctcta aatcagttac caatggctgc tgccagtggc gataagtcgt gtcttaccgg
126 2701 gttggactca agacgatagt taccggataa ggcgcagcgg tcgggctgaa cggggggttc
127 2761 gtgcacacag cccagcttgg agcgaacgac ctacaccgaa ctgagatacc aacagcgtga
128 2821 gctatgagaa agcgccacgc ttcccgaagg gagaaaggcg gacaggtatc cggtaagtgg
129 2881 cagggtcgga acaggagagc gcacgaggga gcttccgggg ggaaacgcct ggtatcttta
130 2941 tagtcctgtc gggtttcgcc acctctggct tgagcgtcga tttttgtgat gctcgtcagg
131 3001 ggggcggagc ctatggaaaa acgcctgcgg tgctggcttc ttccggtgct ttgctttttg
132 3061 ctcacatgtt ctttccggct ttatcccctg attctgtgga taaccgtatt accgcctttg
133 3121 agtgagctga caccgctcgc cgcagtcgaa cgaccgagcg tagcgagtca gtgagcgagg
134 3181 aagcggaaga gcgccttatg tgacattttc tccttacgct ctgttgtgcc gttcggcatc
135 3241 ctgccctgag cgttatatct ctgtgctatt ttctacttca aagcgtgtct gtatgctgtt
136 3301 ctggag
137 // 84 //