view test-data/TEST_4/TEST_4.gbff @ 2:ca9e2125c5de draft

"planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/bakta commit fe1cdf884df206d842be4f0768acb06b0bbcf56f"
author pimarin
date Wed, 17 Aug 2022 10:29:37 +0000
parents 4d315de96666
children eea334d9988b
line wrap: on
line source

LOCUS       p2                      3306 bp    DNA     circular BCT 17-AUG-2022
DEFINITION  plasmid pOSAK1, complete sequence.
ACCESSION   p2
VERSION     p2
KEYWORDS    .
SOURCE      None
  ORGANISM  .
            .
COMMENT     Annotated with Bakta
            Software: v1.4.2
            Database: v3.0
            DOI: 10.1099/mgen.0.000685
            URL: github.com/oschwengers/bakta
            
            ##Genome Annotation Summary:##
            Annotation Date                :: 08/17/2022, 09:36:22
            Annotation Pipeline            :: Bakta
            Annotation Software version    ::  v1.4.2
            Annotation Database version    ::  v3.0
            CDSs                           ::     3
            tRNAs                          ::     0
            tmRNAs                         ::     0
            rRNAs                          ::     0
            ncRNAs                         ::     0
            regulatory ncRNAs              ::     0
            CRISPR Arrays                  ::     0
            oriCs/oriVs                    ::     0
            oriTs                          ::     0
            gaps                           ::     0
FEATURES             Location/Qualifiers
     source          1..3306
                     /mol_type="genomic DNA"
                     /plasmid="pOSAK1"
     gene            <2..736
                     /locus_tag="DOGAIA_00005"
     CDS             <2..736
                     /product="hypothetical protein"
                     /locus_tag="DOGAIA_00005"
                     /translation="SSASSCSFSHMVACSSASSASSFSSSVRLWLFMNPAMLSAVCCCL
                     FIFLFSPFCLSSASCDYIAHHFSTVLPPVFCRRTFQSDNTVTAKKQQCFVGNSNLQTGQ
                     DVQLLYRAYMHAITITLVRASPRHPMSDTEPCFMTKRSGSNTRRRAISRPVRLTAEEDQ
                     EIRKRAAECGKTVSGFLRAAALGKKVNSLTDDRVLKEVMRLGALQKKLFIDGKRVGDRE
                     YAEVLIAITEYHRALLSRLMAD"
                     /codon_start=1
                     /transl_table=4
                     /protein_id="gnl|Bakta|DOGAIA_00005"
                     /inference="ab initio prediction:Prodigal:2.6"
     gene            complement(971..1351)
                     /locus_tag="DOGAIA_00010"
     CDS             complement(971..1351)
                     /product="hypothetical protein"
                     /locus_tag="DOGAIA_00010"
                     /translation="MKKDKKYQIEAIKNKDKTLFIVYATDIYSPSEFFSKIESDLKKKK
                     SKGDVFFDLIIPNGGKKDRYVYTSFNGEKFSSYTLNKVTKTDEYNDLSELSASFFKKNF
                     DKINVNLLSKATSFALKKGIPI"
                     /codon_start=1
                     /transl_table=4
                     /protein_id="gnl|Bakta|DOGAIA_00010"
                     /inference="ab initio prediction:Prodigal:2.6"
     gene            complement(1348..2388)
                     /locus_tag="DOGAIA_00015"
                     /gene="mock1"
     CDS             complement(1348..2388)
                     /note="USERDB:MOCK1"
                     /product="mock hypothetical user protein 1"
                     /locus_tag="DOGAIA_00015"
                     /translation="MAQNPFKALNINIDKIESALTQNGVTNYSSNVKNERETHISGTYK
                     GIDFLIKLMPSGGNTTIGRASGQNNTYFDEIALIIKENCLYSDTKNFEYTIPKFSDDDR
                     ANLFEFLSEEGITITEDNNNDPNCKHQYIMTTSNGDRVRAKIYKRGSIQFQGKYLQIAS
                     LINDFMCSILNMKEIVEQKNKEFNVDIKKETIESELHSKLPKSIDKIHEDIKKQLSCSL
                     IMKKIDVEMEDYSTYCFSALRAIEGFIYQILNDVCNPSSSKNLGEYFTENKPKYIIREI
                     HQETINGEIAEVLCECYTYWHENRHGLFHMKPGIADTKTINKLESIAIIDTVCQLIDGG
                     VARLKL"
                     /codon_start=1
                     /transl_table=4
                     /protein_id="gnl|Bakta|DOGAIA_00015"
                     /inference="ab initio prediction:Prodigal:2.6"
                     /EC_number="0.0.0.0"
                     /gene="mock1"
ORIGIN
        1 ttcttctgcg agttcgtgca gcttctcaca catggtggcc tgctcgtcag catcgagtgc
       61 gtccagtttt tcgagcagcg tcaggctctg gctttttatg aatcccgcca tgttgagtgc
      121 agtttgctgc tgcttgttca tctttctgtt ttctccgttc tgtctgtcat ctgcgtcgtg
      181 tgattatatc gcgcaccact tttcgaccgt cttaccgccg gtattctgcc gacggacatt
      241 tcagtcagac aacactgtca ctgccaaaaa acagcagtgc tttgttggta attcgaactt
      301 gcagacagga caggatgtgc aattgttata ccgcgcatac atgcacgcta ttacaattac
      361 cctggtcagg gcttcgcccc gacaccccat gtcagatacg gagccatgtt ttatgacaaa
      421 acgaagtgga agtaatacgc gcaggcgggc tatcagtcgc cctgttcgtc tgacggcaga
      481 agaagaccag gaaatcagaa aaagggctgc tgaatgcggc aagaccgttt ctggtttttt
      541 acgggcggca gctctcggta agaaagttaa ctcactgact gatgaccggg tgctgaaaga
      601 agttatgcga ctgggggcgt tgcagaaaaa actctttatc gacggcaagc gtgtcgggga
      661 cagagagtat gcggaggtgc tgatcgctat tacggagtat caccgtgccc tgttatccag
      721 gcttatggca gattagcttc ccggagagaa actgtcgaaa acagacggta tgaacgccgt
      781 aagcccccaa accgatcgcc attcactttc atgcatagct atgcagtgag ctgaaagcga
      841 tcctgacgca tttttccggt ttaccccggg gaaaacatct ctttttgcgg tgtctgcgtc
      901 agaatcgcgt tcagcgcgtt ttggcggtgc gcgtaatgag acgttatggt aaatgtcttc
      961 tggcttgata ttatattgga atgccttttt tcaaagcaaa tgatgtggct ttggatagaa
     1021 ggtttacgtt gatcttatca aagttttttt taaagaacga agccgagagc tcagataaat
     1081 cattatattc atcagttttc gtaactttgt ttaatgtgta acttgaaaac ttctcgccat
     1141 taaatgacgt atagacgtaa cgatcttttt ttccaccgtt aggaattatt aaatcaaaaa
     1201 aaacatcacc cttgcttttc tttttcttca agtcggattc gatttttgag aaaaattcgc
     1261 tcgggctata aatatcagta gcatagacaa taaataaagt tttatcttta ttttttattg
     1321 cttctatttg atatttttta tcttttttca taatttcaac ctagctacgc caccatctat
     1381 taattggcaa acggtatcga tgattgcgat tgattctaat ttgttaattg tcttcgtgtc
     1441 agctattcct ggtttcatat gaaacaaacc atgcctgttc tcatgccagt aagtgtagca
     1501 ttcacacaaa acttccgcta tttcaccatt tatagtttct tggtgtattt ctctgattat
     1561 atatttgggt ttgttttcag tgaagtattc gccaaggttc tttgatgatg atggattgca
     1621 aacatcatta agtatttgat atataaagcc ttctatggct cttaatgcag agaagcagta
     1681 tgttgagtaa tcttccattt cgacatctat ttttttcatt attagcgagc atgatagctg
     1741 ttttttgata tcttcatgga ttttatcgat gctttttggt agtttgctat gcaactcgga
     1801 ctcaatagtt tcttttttta tgtcaacatt aaattcttta tttttttgtt cgacaatctc
     1861 tttcatgttt agtattgagc acatgaaatc gttaatcaaa ctcgcgattt gaaggtattt
     1921 tccttggaat tgaatagagc cgcgcttgta aatttttgcc ctgaccctgt caccattgct
     1981 ggtggtcata atatattggt gtttacaatt aggatcgtta ttattatctt ctgttattgt
     2041 tatcccctct tcagaaagaa attcaaatag atttgccctg tcatcatcac tgaattttgg
     2101 aatggtgtat tcaaagttct ttgtgtctga atacaaacag ttttctttta taatcaaggc
     2161 gatttcatca aagtaagtgt tattttgccc agacgctctt ccgatagtgg tatttccgcc
     2221 tgatggcatt agttttatta agaagtctat tcctttatat gtgccagata tgtgagtttc
     2281 tctttcgttt tttacattag aggaatagtt tgtgacgcca ttctgcgtca gagcagactc
     2341 aatcttgtca atattgatat ttagtgcttt aaacgggttc tgtgccattg ggtcaatccg
     2401 ttgttttttt tgaatatgta cagatcttgt ttttttgtca acggaatagc tgttcgttga
     2461 cttgatagac cgattgattc atcatctcat aaataaagaa aaaccaccgc taccaacggt
     2521 ggttttctca aggttcgctg agctaccaac tctttgaacc aaggtaactg gcttggagga
     2581 gcgcagtcac caaaatctgt tctttcagtt tagccttaac aggtgcataa cttcaagaca
     2641 aactcctcta aatcagttac caatggctgc tgccagtggc gataagtcgt gtcttaccgg
     2701 gttggactca agacgatagt taccggataa ggcgcagcgg tcgggctgaa cggggggttc
     2761 gtgcacacag cccagcttgg agcgaacgac ctacaccgaa ctgagatacc aacagcgtga
     2821 gctatgagaa agcgccacgc ttcccgaagg gagaaaggcg gacaggtatc cggtaagtgg
     2881 cagggtcgga acaggagagc gcacgaggga gcttccgggg ggaaacgcct ggtatcttta
     2941 tagtcctgtc gggtttcgcc acctctggct tgagcgtcga tttttgtgat gctcgtcagg
     3001 ggggcggagc ctatggaaaa acgcctgcgg tgctggcttc ttccggtgct ttgctttttg
     3061 ctcacatgtt ctttccggct ttatcccctg attctgtgga taaccgtatt accgcctttg
     3121 agtgagctga caccgctcgc cgcagtcgaa cgaccgagcg tagcgagtca gtgagcgagg
     3181 aagcggaaga gcgccttatg tgacattttc tccttacgct ctgttgtgcc gttcggcatc
     3241 ctgccctgag cgttatatct ctgtgctatt ttctacttca aagcgtgtct gtatgctgtt
     3301 ctggag
//