Mercurial > repos > pimarin > bakta
view test-data/TEST_4/TEST_4.gbff @ 2:ca9e2125c5de draft
"planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/bakta commit fe1cdf884df206d842be4f0768acb06b0bbcf56f"
author | pimarin |
---|---|
date | Wed, 17 Aug 2022 10:29:37 +0000 |
parents | 4d315de96666 |
children | eea334d9988b |
line wrap: on
line source
LOCUS p2 3306 bp DNA circular BCT 17-AUG-2022 DEFINITION plasmid pOSAK1, complete sequence. ACCESSION p2 VERSION p2 KEYWORDS . SOURCE None ORGANISM . . COMMENT Annotated with Bakta Software: v1.4.2 Database: v3.0 DOI: 10.1099/mgen.0.000685 URL: github.com/oschwengers/bakta ##Genome Annotation Summary:## Annotation Date :: 08/17/2022, 09:36:22 Annotation Pipeline :: Bakta Annotation Software version :: v1.4.2 Annotation Database version :: v3.0 CDSs :: 3 tRNAs :: 0 tmRNAs :: 0 rRNAs :: 0 ncRNAs :: 0 regulatory ncRNAs :: 0 CRISPR Arrays :: 0 oriCs/oriVs :: 0 oriTs :: 0 gaps :: 0 FEATURES Location/Qualifiers source 1..3306 /mol_type="genomic DNA" /plasmid="pOSAK1" gene <2..736 /locus_tag="DOGAIA_00005" CDS <2..736 /product="hypothetical protein" /locus_tag="DOGAIA_00005" /translation="SSASSCSFSHMVACSSASSASSFSSSVRLWLFMNPAMLSAVCCCL FIFLFSPFCLSSASCDYIAHHFSTVLPPVFCRRTFQSDNTVTAKKQQCFVGNSNLQTGQ DVQLLYRAYMHAITITLVRASPRHPMSDTEPCFMTKRSGSNTRRRAISRPVRLTAEEDQ EIRKRAAECGKTVSGFLRAAALGKKVNSLTDDRVLKEVMRLGALQKKLFIDGKRVGDRE YAEVLIAITEYHRALLSRLMAD" /codon_start=1 /transl_table=4 /protein_id="gnl|Bakta|DOGAIA_00005" /inference="ab initio prediction:Prodigal:2.6" gene complement(971..1351) /locus_tag="DOGAIA_00010" CDS complement(971..1351) /product="hypothetical protein" /locus_tag="DOGAIA_00010" /translation="MKKDKKYQIEAIKNKDKTLFIVYATDIYSPSEFFSKIESDLKKKK SKGDVFFDLIIPNGGKKDRYVYTSFNGEKFSSYTLNKVTKTDEYNDLSELSASFFKKNF DKINVNLLSKATSFALKKGIPI" /codon_start=1 /transl_table=4 /protein_id="gnl|Bakta|DOGAIA_00010" /inference="ab initio prediction:Prodigal:2.6" gene complement(1348..2388) /locus_tag="DOGAIA_00015" /gene="mock1" CDS complement(1348..2388) /note="USERDB:MOCK1" /product="mock hypothetical user protein 1" /locus_tag="DOGAIA_00015" /translation="MAQNPFKALNINIDKIESALTQNGVTNYSSNVKNERETHISGTYK GIDFLIKLMPSGGNTTIGRASGQNNTYFDEIALIIKENCLYSDTKNFEYTIPKFSDDDR ANLFEFLSEEGITITEDNNNDPNCKHQYIMTTSNGDRVRAKIYKRGSIQFQGKYLQIAS LINDFMCSILNMKEIVEQKNKEFNVDIKKETIESELHSKLPKSIDKIHEDIKKQLSCSL IMKKIDVEMEDYSTYCFSALRAIEGFIYQILNDVCNPSSSKNLGEYFTENKPKYIIREI HQETINGEIAEVLCECYTYWHENRHGLFHMKPGIADTKTINKLESIAIIDTVCQLIDGG VARLKL" /codon_start=1 /transl_table=4 /protein_id="gnl|Bakta|DOGAIA_00015" /inference="ab initio prediction:Prodigal:2.6" /EC_number="0.0.0.0" /gene="mock1" ORIGIN 1 ttcttctgcg agttcgtgca gcttctcaca catggtggcc tgctcgtcag catcgagtgc 61 gtccagtttt tcgagcagcg tcaggctctg gctttttatg aatcccgcca tgttgagtgc 121 agtttgctgc tgcttgttca tctttctgtt ttctccgttc tgtctgtcat ctgcgtcgtg 181 tgattatatc gcgcaccact tttcgaccgt cttaccgccg gtattctgcc gacggacatt 241 tcagtcagac aacactgtca ctgccaaaaa acagcagtgc tttgttggta attcgaactt 301 gcagacagga caggatgtgc aattgttata ccgcgcatac atgcacgcta ttacaattac 361 cctggtcagg gcttcgcccc gacaccccat gtcagatacg gagccatgtt ttatgacaaa 421 acgaagtgga agtaatacgc gcaggcgggc tatcagtcgc cctgttcgtc tgacggcaga 481 agaagaccag gaaatcagaa aaagggctgc tgaatgcggc aagaccgttt ctggtttttt 541 acgggcggca gctctcggta agaaagttaa ctcactgact gatgaccggg tgctgaaaga 601 agttatgcga ctgggggcgt tgcagaaaaa actctttatc gacggcaagc gtgtcgggga 661 cagagagtat gcggaggtgc tgatcgctat tacggagtat caccgtgccc tgttatccag 721 gcttatggca gattagcttc ccggagagaa actgtcgaaa acagacggta tgaacgccgt 781 aagcccccaa accgatcgcc attcactttc atgcatagct atgcagtgag ctgaaagcga 841 tcctgacgca tttttccggt ttaccccggg gaaaacatct ctttttgcgg tgtctgcgtc 901 agaatcgcgt tcagcgcgtt ttggcggtgc gcgtaatgag acgttatggt aaatgtcttc 961 tggcttgata ttatattgga atgccttttt tcaaagcaaa tgatgtggct ttggatagaa 1021 ggtttacgtt gatcttatca aagttttttt taaagaacga agccgagagc tcagataaat 1081 cattatattc atcagttttc gtaactttgt ttaatgtgta acttgaaaac ttctcgccat 1141 taaatgacgt atagacgtaa cgatcttttt ttccaccgtt aggaattatt aaatcaaaaa 1201 aaacatcacc cttgcttttc tttttcttca agtcggattc gatttttgag aaaaattcgc 1261 tcgggctata aatatcagta gcatagacaa taaataaagt tttatcttta ttttttattg 1321 cttctatttg atatttttta tcttttttca taatttcaac ctagctacgc caccatctat 1381 taattggcaa acggtatcga tgattgcgat tgattctaat ttgttaattg tcttcgtgtc 1441 agctattcct ggtttcatat gaaacaaacc atgcctgttc tcatgccagt aagtgtagca 1501 ttcacacaaa acttccgcta tttcaccatt tatagtttct tggtgtattt ctctgattat 1561 atatttgggt ttgttttcag tgaagtattc gccaaggttc tttgatgatg atggattgca 1621 aacatcatta agtatttgat atataaagcc ttctatggct cttaatgcag agaagcagta 1681 tgttgagtaa tcttccattt cgacatctat ttttttcatt attagcgagc atgatagctg 1741 ttttttgata tcttcatgga ttttatcgat gctttttggt agtttgctat gcaactcgga 1801 ctcaatagtt tcttttttta tgtcaacatt aaattcttta tttttttgtt cgacaatctc 1861 tttcatgttt agtattgagc acatgaaatc gttaatcaaa ctcgcgattt gaaggtattt 1921 tccttggaat tgaatagagc cgcgcttgta aatttttgcc ctgaccctgt caccattgct 1981 ggtggtcata atatattggt gtttacaatt aggatcgtta ttattatctt ctgttattgt 2041 tatcccctct tcagaaagaa attcaaatag atttgccctg tcatcatcac tgaattttgg 2101 aatggtgtat tcaaagttct ttgtgtctga atacaaacag ttttctttta taatcaaggc 2161 gatttcatca aagtaagtgt tattttgccc agacgctctt ccgatagtgg tatttccgcc 2221 tgatggcatt agttttatta agaagtctat tcctttatat gtgccagata tgtgagtttc 2281 tctttcgttt tttacattag aggaatagtt tgtgacgcca ttctgcgtca gagcagactc 2341 aatcttgtca atattgatat ttagtgcttt aaacgggttc tgtgccattg ggtcaatccg 2401 ttgttttttt tgaatatgta cagatcttgt ttttttgtca acggaatagc tgttcgttga 2461 cttgatagac cgattgattc atcatctcat aaataaagaa aaaccaccgc taccaacggt 2521 ggttttctca aggttcgctg agctaccaac tctttgaacc aaggtaactg gcttggagga 2581 gcgcagtcac caaaatctgt tctttcagtt tagccttaac aggtgcataa cttcaagaca 2641 aactcctcta aatcagttac caatggctgc tgccagtggc gataagtcgt gtcttaccgg 2701 gttggactca agacgatagt taccggataa ggcgcagcgg tcgggctgaa cggggggttc 2761 gtgcacacag cccagcttgg agcgaacgac ctacaccgaa ctgagatacc aacagcgtga 2821 gctatgagaa agcgccacgc ttcccgaagg gagaaaggcg gacaggtatc cggtaagtgg 2881 cagggtcgga acaggagagc gcacgaggga gcttccgggg ggaaacgcct ggtatcttta 2941 tagtcctgtc gggtttcgcc acctctggct tgagcgtcga tttttgtgat gctcgtcagg 3001 ggggcggagc ctatggaaaa acgcctgcgg tgctggcttc ttccggtgct ttgctttttg 3061 ctcacatgtt ctttccggct ttatcccctg attctgtgga taaccgtatt accgcctttg 3121 agtgagctga caccgctcgc cgcagtcgaa cgaccgagcg tagcgagtca gtgagcgagg 3181 aagcggaaga gcgccttatg tgacattttc tccttacgct ctgttgtgcc gttcggcatc 3241 ctgccctgag cgttatatct ctgtgctatt ttctacttca aagcgtgtct gtatgctgtt 3301 ctggag //