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comparison test-data/TEST_2/TEST_2.embl @ 3:eea334d9988b draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit 73af464cc860250c3fa3dd433602283ab5a44f53-dirty
author pimarin
date Thu, 22 Dec 2022 15:01:43 +0000
parents ca9e2125c5de
children 8c7499c6f32a
comparison
equal deleted inserted replaced
2:ca9e2125c5de 3:eea334d9988b
1 ID NC_002127; SV 1; circular; DNA; ; PRO; 3306 BP. 1 ID NC_002127; SV 1; circular; DNA; ; PRO; 1330 BP.
2 XX 2 XX
3 AC NC_002127; 3 AC NC_002127;
4 XX 4 XX
5 DE Escherichia coli o157:h7 Sakai plasmid pOSAK1, complete sequence 5 DE Escherichia coli o157:h7 Sakai plasmid pOSAK1, complete sequence
6 XX 6 XX
7 OS Escherichia coli o157:h7 Sakai 7 OS Escherichia coli o157:h7 Sakai
8 OC . 8 OC .
9 XX 9 XX
10 CC Annotated with Bakta 10 CC Annotated with Bakta
11 CC Software: v1.4.2 11 CC Software: v1.6.1
12 CC Database: v3.0 12 CC Database: v4.0
13 CC DOI: 10.1099/mgen.0.000685 13 CC DOI: 10.1099/mgen.0.000685
14 CC URL: github.com/oschwengers/bakta 14 CC URL: github.com/oschwengers/bakta
15 CC 15 CC
16 CC ##Genome Annotation Summary:## 16 CC ##Genome Annotation Summary:##
17 CC Annotation Date :: 08/17/2022, 09:35:38 17 CC Annotation Date :: 12/19/2022, 10:20:45
18 CC Annotation Pipeline :: Bakta 18 CC Annotation Pipeline :: Bakta
19 CC Annotation Software version :: v1.4.2 19 CC Annotation Software version :: v1.6.1
20 CC Annotation Database version :: v3.0 20 CC Annotation Database version :: v4.0
21 CC CDSs :: 3 21 CC CDSs :: 2
22 CC tRNAs :: 0 22 CC tRNAs :: 0
23 CC tmRNAs :: 0 23 CC tmRNAs :: 0
24 CC rRNAs :: 0 24 CC rRNAs :: 0
25 CC ncRNAs :: 0 25 CC ncRNAs :: 0
26 CC regulatory ncRNAs :: 0 26 CC regulatory ncRNAs :: 0
27 CC CRISPR Arrays :: 0 27 CC CRISPR Arrays :: 0
28 CC oriCs/oriVs :: 0 28 CC oriCs/oriVs :: 0
29 CC oriTs :: 0 29 CC oriTs :: 0
30 CC gaps :: 0 30 CC gaps :: 0
31 CC pseudogenes :: 0
31 XX 32 XX
32 FH Key Location/Qualifiers 33 FH Key Location/Qualifiers
33 FH 34 FH
34 FT source 1..3306 35 FT source 1..1330
35 FT /mol_type="genomic DNA" 36 FT /mol_type="genomic DNA"
36 FT /organism="Escherichia coli o157:h7 Sakai" 37 FT /organism="Escherichia coli o157:h7 Sakai"
37 FT /strain="Sakai" 38 FT /strain="Sakai"
38 FT /plasmid="pOSAK1" 39 FT /plasmid="pOSAK1"
39 FT gene <2..736 40 FT gene 413..736
40 FT /locus_tag="DOGAIA_00005" 41 FT /locus_tag="IHHALP_00005"
41 FT CDS <2..736 42 FT CDS 413..736
42 FT /product="hypothetical protein" 43 FT /product="hypothetical protein"
43 FT /locus_tag="DOGAIA_00005" 44 FT /locus_tag="IHHALP_00005"
44 FT /translation="SSASSCSFSHMVACSSASSASSFSSSVRLWLFMNPAMLSAVCCCL 45 FT /protein_id="gnl|Bakta|IHHALP_00005"
45 FT FIFLFSPFCLSSASCDYIAHHFSTVLPPVFCRRTFQSDNTVTAKKQQCFVGNSNLQTGQ 46 FT /translation="MTKRSGSNTRRRAISRPVRLTAEEDQEIRKRAAECGKTVSGFLRA
46 FT DVQLLYRAYMHAITITLVRASPRHPMSDTEPCFMTKRSGSNTRRRAISRPVRLTAEEDQ 47 FT AALGKKVNSLTDDRVLKEVMRLGALQKKLFIDGKRVGDREYAEVLIAITEYHRALLSRL
47 FT EIRKRAAECGKTVSGFLRAAALGKKVNSLTDDRVLKEVMRLGALQKKLFIDGKRVGDRE 48 FT MAD"
48 FT YAEVLIAITEYHRALLSRLMAD"
49 FT /codon_start=1 49 FT /codon_start=1
50 FT /transl_table=11 50 FT /transl_table=11
51 FT /protein_id="gnl|Bakta|DOGAIA_00005"
52 FT /inference="ab initio prediction:Prodigal:2.6" 51 FT /inference="ab initio prediction:Prodigal:2.6"
53 FT gene complement(971..1351) 52 FT gene complement(join(971..1330,1..141))
54 FT /locus_tag="DOGAIA_00010" 53 FT /locus_tag="IHHALP_00010"
55 FT CDS complement(971..1351) 54 FT CDS complement(join(971..1330,1..141))
56 FT /product="hypothetical protein" 55 FT /product="hypothetical protein"
57 FT /locus_tag="DOGAIA_00010" 56 FT /locus_tag="IHHALP_00010"
58 FT /translation="MKKDKKYQIEAIKNKDKTLFIVYATDIYSPSEFFSKIESDLKKKK 57 FT /protein_id="gnl|Bakta|IHHALP_00010"
59 FT SKGDVFFDLIIPNGGKKDRYVYTSFNGEKFSSYTLNKVTKTDEYNDLSELSASFFKKNF 58 FT /translation="MNKQQQTALNMAGFIKSQSLTLLEKLDALDADEQATMCEKLHELA
60 FT DKINVNLLSKATSFALKKGIPI" 59 FT EEQIEAIKNKDKTLFIVYATDIYSPSEFFSKIESDLKKKKSKGDVFFDLIIPNGGKKDR
60 FT YVYTSFNGEKFSSYTLNKVTKTDEYNDLSELSASFFKKNFDKINVNLLSKATSFALKKG
61 FT IPI"
61 FT /codon_start=1 62 FT /codon_start=1
62 FT /transl_table=11 63 FT /transl_table=11
63 FT /protein_id="gnl|Bakta|DOGAIA_00010"
64 FT /inference="ab initio prediction:Prodigal:2.6"
65 FT gene complement(1348..2388)
66 FT /locus_tag="DOGAIA_00015"
67 FT CDS complement(1348..2388)
68 FT /product="hypothetical protein"
69 FT /locus_tag="DOGAIA_00015"
70 FT /translation="MAQNPFKALNINIDKIESALTQNGVTNYSSNVKNERETHISGTYK
71 FT GIDFLIKLMPSGGNTTIGRASGQNNTYFDEIALIIKENCLYSDTKNFEYTIPKFSDDDR
72 FT ANLFEFLSEEGITITEDNNNDPNCKHQYIMTTSNGDRVRAKIYKRGSIQFQGKYLQIAS
73 FT LINDFMCSILNMKEIVEQKNKEFNVDIKKETIESELHSKLPKSIDKIHEDIKKQLSCSL
74 FT IMKKIDVEMEDYSTYCFSALRAIEGFIYQILNDVCNPSSSKNLGEYFTENKPKYIIREI
75 FT HQETINGEIAEVLCECYTYWHENRHGLFHMKPGIADTKTINKLESIAIIDTVCQLIDGG
76 FT VARLKL"
77 FT /codon_start=1
78 FT /transl_table=11
79 FT /protein_id="gnl|Bakta|DOGAIA_00015"
80 FT /inference="ab initio prediction:Prodigal:2.6" 64 FT /inference="ab initio prediction:Prodigal:2.6"
81 XX 65 XX
82 SQ Sequence 3306 BP; 797 A; 692 C; 743 G; 1074 T; 0 other; 66 SQ Sequence 1330 BP; 330 A; 291 C; 310 G; 399 T; 0 other;
83 ttcttctgcg agttcgtgca gcttctcaca catggtggcc tgctcgtcag catcgagtgc 60 67 ttcttctgcg agttcgtgca gcttctcaca catggtggcc tgctcgtcag catcgagtgc 60
84 gtccagtttt tcgagcagcg tcaggctctg gctttttatg aatcccgcca tgttgagtgc 120 68 gtccagtttt tcgagcagcg tcaggctctg gctttttatg aatcccgcca tgttgagtgc 120
85 agtttgctgc tgcttgttca tctttctgtt ttctccgttc tgtctgtcat ctgcgtcgtg 180 69 agtttgctgc tgcttgttca tctttctgtt ttctccgttc tgtctgtcat ctgcgtcgtg 180
86 tgattatatc gcgcaccact tttcgaccgt cttaccgccg gtattctgcc gacggacatt 240 70 tgattatatc gcgcaccact tttcgaccgt cttaccgccg gtattctgcc gacggacatt 240
87 tcagtcagac aacactgtca ctgccaaaaa acagcagtgc tttgttggta attcgaactt 300 71 tcagtcagac aacactgtca ctgccaaaaa acagcagtgc tttgttggta attcgaactt 300
100 ggtttacgtt gatcttatca aagttttttt taaagaacga agccgagagc tcagataaat 1080 84 ggtttacgtt gatcttatca aagttttttt taaagaacga agccgagagc tcagataaat 1080
101 cattatattc atcagttttc gtaactttgt ttaatgtgta acttgaaaac ttctcgccat 1140 85 cattatattc atcagttttc gtaactttgt ttaatgtgta acttgaaaac ttctcgccat 1140
102 taaatgacgt atagacgtaa cgatcttttt ttccaccgtt aggaattatt aaatcaaaaa 1200 86 taaatgacgt atagacgtaa cgatcttttt ttccaccgtt aggaattatt aaatcaaaaa 1200
103 aaacatcacc cttgcttttc tttttcttca agtcggattc gatttttgag aaaaattcgc 1260 87 aaacatcacc cttgcttttc tttttcttca agtcggattc gatttttgag aaaaattcgc 1260
104 tcgggctata aatatcagta gcatagacaa taaataaagt tttatcttta ttttttattg 1320 88 tcgggctata aatatcagta gcatagacaa taaataaagt tttatcttta ttttttattg 1320
105 cttctatttg atatttttta tcttttttca taatttcaac ctagctacgc caccatctat 1380 89 cttctatttg 1330
106 taattggcaa acggtatcga tgattgcgat tgattctaat ttgttaattg tcttcgtgtc 1440
107 agctattcct ggtttcatat gaaacaaacc atgcctgttc tcatgccagt aagtgtagca 1500
108 ttcacacaaa acttccgcta tttcaccatt tatagtttct tggtgtattt ctctgattat 1560
109 atatttgggt ttgttttcag tgaagtattc gccaaggttc tttgatgatg atggattgca 1620
110 aacatcatta agtatttgat atataaagcc ttctatggct cttaatgcag agaagcagta 1680
111 tgttgagtaa tcttccattt cgacatctat ttttttcatt attagcgagc atgatagctg 1740
112 ttttttgata tcttcatgga ttttatcgat gctttttggt agtttgctat gcaactcgga 1800
113 ctcaatagtt tcttttttta tgtcaacatt aaattcttta tttttttgtt cgacaatctc 1860
114 tttcatgttt agtattgagc acatgaaatc gttaatcaaa ctcgcgattt gaaggtattt 1920
115 tccttggaat tgaatagagc cgcgcttgta aatttttgcc ctgaccctgt caccattgct 1980
116 ggtggtcata atatattggt gtttacaatt aggatcgtta ttattatctt ctgttattgt 2040
117 tatcccctct tcagaaagaa attcaaatag atttgccctg tcatcatcac tgaattttgg 2100
118 aatggtgtat tcaaagttct ttgtgtctga atacaaacag ttttctttta taatcaaggc 2160
119 gatttcatca aagtaagtgt tattttgccc agacgctctt ccgatagtgg tatttccgcc 2220
120 tgatggcatt agttttatta agaagtctat tcctttatat gtgccagata tgtgagtttc 2280
121 tctttcgttt tttacattag aggaatagtt tgtgacgcca ttctgcgtca gagcagactc 2340
122 aatcttgtca atattgatat ttagtgcttt aaacgggttc tgtgccattg ggtcaatccg 2400
123 ttgttttttt tgaatatgta cagatcttgt ttttttgtca acggaatagc tgttcgttga 2460
124 cttgatagac cgattgattc atcatctcat aaataaagaa aaaccaccgc taccaacggt 2520
125 ggttttctca aggttcgctg agctaccaac tctttgaacc aaggtaactg gcttggagga 2580
126 gcgcagtcac caaaatctgt tctttcagtt tagccttaac aggtgcataa cttcaagaca 2640
127 aactcctcta aatcagttac caatggctgc tgccagtggc gataagtcgt gtcttaccgg 2700
128 gttggactca agacgatagt taccggataa ggcgcagcgg tcgggctgaa cggggggttc 2760
129 gtgcacacag cccagcttgg agcgaacgac ctacaccgaa ctgagatacc aacagcgtga 2820
130 gctatgagaa agcgccacgc ttcccgaagg gagaaaggcg gacaggtatc cggtaagtgg 2880
131 cagggtcgga acaggagagc gcacgaggga gcttccgggg ggaaacgcct ggtatcttta 2940
132 tagtcctgtc gggtttcgcc acctctggct tgagcgtcga tttttgtgat gctcgtcagg 3000
133 ggggcggagc ctatggaaaa acgcctgcgg tgctggcttc ttccggtgct ttgctttttg 3060
134 ctcacatgtt ctttccggct ttatcccctg attctgtgga taaccgtatt accgcctttg 3120
135 agtgagctga caccgctcgc cgcagtcgaa cgaccgagcg tagcgagtca gtgagcgagg 3180
136 aagcggaaga gcgccttatg tgacattttc tccttacgct ctgttgtgcc gttcggcatc 3240
137 ctgccctgag cgttatatct ctgtgctatt ttctacttca aagcgtgtct gtatgctgtt 3300
138 ctggag 3306
139 // 90 //