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view test-data/TEST_2/TEST_2.embl @ 2:ca9e2125c5de draft
"planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/bakta commit fe1cdf884df206d842be4f0768acb06b0bbcf56f"
author | pimarin |
---|---|
date | Wed, 17 Aug 2022 10:29:37 +0000 |
parents | 4d315de96666 |
children | eea334d9988b |
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ID NC_002127; SV 1; circular; DNA; ; PRO; 3306 BP. XX AC NC_002127; XX DE Escherichia coli o157:h7 Sakai plasmid pOSAK1, complete sequence XX OS Escherichia coli o157:h7 Sakai OC . XX CC Annotated with Bakta CC Software: v1.4.2 CC Database: v3.0 CC DOI: 10.1099/mgen.0.000685 CC URL: github.com/oschwengers/bakta CC CC ##Genome Annotation Summary:## CC Annotation Date :: 08/17/2022, 09:35:38 CC Annotation Pipeline :: Bakta CC Annotation Software version :: v1.4.2 CC Annotation Database version :: v3.0 CC CDSs :: 3 CC tRNAs :: 0 CC tmRNAs :: 0 CC rRNAs :: 0 CC ncRNAs :: 0 CC regulatory ncRNAs :: 0 CC CRISPR Arrays :: 0 CC oriCs/oriVs :: 0 CC oriTs :: 0 CC gaps :: 0 XX FH Key Location/Qualifiers FH FT source 1..3306 FT /mol_type="genomic DNA" FT /organism="Escherichia coli o157:h7 Sakai" FT /strain="Sakai" FT /plasmid="pOSAK1" FT gene <2..736 FT /locus_tag="DOGAIA_00005" FT CDS <2..736 FT /product="hypothetical protein" FT /locus_tag="DOGAIA_00005" FT /translation="SSASSCSFSHMVACSSASSASSFSSSVRLWLFMNPAMLSAVCCCL FT FIFLFSPFCLSSASCDYIAHHFSTVLPPVFCRRTFQSDNTVTAKKQQCFVGNSNLQTGQ FT DVQLLYRAYMHAITITLVRASPRHPMSDTEPCFMTKRSGSNTRRRAISRPVRLTAEEDQ FT EIRKRAAECGKTVSGFLRAAALGKKVNSLTDDRVLKEVMRLGALQKKLFIDGKRVGDRE FT YAEVLIAITEYHRALLSRLMAD" FT /codon_start=1 FT /transl_table=11 FT /protein_id="gnl|Bakta|DOGAIA_00005" FT /inference="ab initio prediction:Prodigal:2.6" FT gene complement(971..1351) FT /locus_tag="DOGAIA_00010" FT CDS complement(971..1351) FT /product="hypothetical protein" FT /locus_tag="DOGAIA_00010" FT /translation="MKKDKKYQIEAIKNKDKTLFIVYATDIYSPSEFFSKIESDLKKKK FT SKGDVFFDLIIPNGGKKDRYVYTSFNGEKFSSYTLNKVTKTDEYNDLSELSASFFKKNF FT DKINVNLLSKATSFALKKGIPI" FT /codon_start=1 FT /transl_table=11 FT /protein_id="gnl|Bakta|DOGAIA_00010" FT /inference="ab initio prediction:Prodigal:2.6" FT gene complement(1348..2388) FT /locus_tag="DOGAIA_00015" FT CDS complement(1348..2388) FT /product="hypothetical protein" FT /locus_tag="DOGAIA_00015" FT /translation="MAQNPFKALNINIDKIESALTQNGVTNYSSNVKNERETHISGTYK FT GIDFLIKLMPSGGNTTIGRASGQNNTYFDEIALIIKENCLYSDTKNFEYTIPKFSDDDR FT ANLFEFLSEEGITITEDNNNDPNCKHQYIMTTSNGDRVRAKIYKRGSIQFQGKYLQIAS FT LINDFMCSILNMKEIVEQKNKEFNVDIKKETIESELHSKLPKSIDKIHEDIKKQLSCSL FT IMKKIDVEMEDYSTYCFSALRAIEGFIYQILNDVCNPSSSKNLGEYFTENKPKYIIREI FT HQETINGEIAEVLCECYTYWHENRHGLFHMKPGIADTKTINKLESIAIIDTVCQLIDGG FT VARLKL" FT /codon_start=1 FT /transl_table=11 FT /protein_id="gnl|Bakta|DOGAIA_00015" FT /inference="ab initio prediction:Prodigal:2.6" XX SQ Sequence 3306 BP; 797 A; 692 C; 743 G; 1074 T; 0 other; ttcttctgcg agttcgtgca gcttctcaca catggtggcc tgctcgtcag catcgagtgc 60 gtccagtttt tcgagcagcg tcaggctctg gctttttatg aatcccgcca tgttgagtgc 120 agtttgctgc tgcttgttca tctttctgtt ttctccgttc tgtctgtcat ctgcgtcgtg 180 tgattatatc gcgcaccact tttcgaccgt cttaccgccg gtattctgcc gacggacatt 240 tcagtcagac aacactgtca ctgccaaaaa acagcagtgc tttgttggta attcgaactt 300 gcagacagga caggatgtgc aattgttata ccgcgcatac atgcacgcta ttacaattac 360 cctggtcagg gcttcgcccc gacaccccat gtcagatacg gagccatgtt ttatgacaaa 420 acgaagtgga agtaatacgc gcaggcgggc tatcagtcgc cctgttcgtc tgacggcaga 480 agaagaccag gaaatcagaa aaagggctgc tgaatgcggc aagaccgttt ctggtttttt 540 acgggcggca gctctcggta agaaagttaa ctcactgact gatgaccggg tgctgaaaga 600 agttatgcga ctgggggcgt tgcagaaaaa actctttatc gacggcaagc gtgtcgggga 660 cagagagtat gcggaggtgc tgatcgctat tacggagtat caccgtgccc tgttatccag 720 gcttatggca gattagcttc ccggagagaa actgtcgaaa acagacggta tgaacgccgt 780 aagcccccaa accgatcgcc attcactttc atgcatagct atgcagtgag ctgaaagcga 840 tcctgacgca tttttccggt ttaccccggg gaaaacatct ctttttgcgg tgtctgcgtc 900 agaatcgcgt tcagcgcgtt ttggcggtgc gcgtaatgag acgttatggt aaatgtcttc 960 tggcttgata ttatattgga atgccttttt tcaaagcaaa tgatgtggct ttggatagaa 1020 ggtttacgtt gatcttatca aagttttttt taaagaacga agccgagagc tcagataaat 1080 cattatattc atcagttttc gtaactttgt ttaatgtgta acttgaaaac ttctcgccat 1140 taaatgacgt atagacgtaa cgatcttttt ttccaccgtt aggaattatt aaatcaaaaa 1200 aaacatcacc cttgcttttc tttttcttca agtcggattc gatttttgag aaaaattcgc 1260 tcgggctata aatatcagta gcatagacaa taaataaagt tttatcttta ttttttattg 1320 cttctatttg atatttttta tcttttttca taatttcaac ctagctacgc caccatctat 1380 taattggcaa acggtatcga tgattgcgat tgattctaat ttgttaattg tcttcgtgtc 1440 agctattcct ggtttcatat gaaacaaacc atgcctgttc tcatgccagt aagtgtagca 1500 ttcacacaaa acttccgcta tttcaccatt tatagtttct tggtgtattt ctctgattat 1560 atatttgggt ttgttttcag tgaagtattc gccaaggttc tttgatgatg atggattgca 1620 aacatcatta agtatttgat atataaagcc ttctatggct cttaatgcag agaagcagta 1680 tgttgagtaa tcttccattt cgacatctat ttttttcatt attagcgagc atgatagctg 1740 ttttttgata tcttcatgga ttttatcgat gctttttggt agtttgctat gcaactcgga 1800 ctcaatagtt tcttttttta tgtcaacatt aaattcttta tttttttgtt cgacaatctc 1860 tttcatgttt agtattgagc acatgaaatc gttaatcaaa ctcgcgattt gaaggtattt 1920 tccttggaat tgaatagagc cgcgcttgta aatttttgcc ctgaccctgt caccattgct 1980 ggtggtcata atatattggt gtttacaatt aggatcgtta ttattatctt ctgttattgt 2040 tatcccctct tcagaaagaa attcaaatag atttgccctg tcatcatcac tgaattttgg 2100 aatggtgtat tcaaagttct ttgtgtctga atacaaacag ttttctttta taatcaaggc 2160 gatttcatca aagtaagtgt tattttgccc agacgctctt ccgatagtgg tatttccgcc 2220 tgatggcatt agttttatta agaagtctat tcctttatat gtgccagata tgtgagtttc 2280 tctttcgttt tttacattag aggaatagtt tgtgacgcca ttctgcgtca gagcagactc 2340 aatcttgtca atattgatat ttagtgcttt aaacgggttc tgtgccattg ggtcaatccg 2400 ttgttttttt tgaatatgta cagatcttgt ttttttgtca acggaatagc tgttcgttga 2460 cttgatagac cgattgattc atcatctcat aaataaagaa aaaccaccgc taccaacggt 2520 ggttttctca aggttcgctg agctaccaac tctttgaacc aaggtaactg gcttggagga 2580 gcgcagtcac caaaatctgt tctttcagtt tagccttaac aggtgcataa cttcaagaca 2640 aactcctcta aatcagttac caatggctgc tgccagtggc gataagtcgt gtcttaccgg 2700 gttggactca agacgatagt taccggataa ggcgcagcgg tcgggctgaa cggggggttc 2760 gtgcacacag cccagcttgg agcgaacgac ctacaccgaa ctgagatacc aacagcgtga 2820 gctatgagaa agcgccacgc ttcccgaagg gagaaaggcg gacaggtatc cggtaagtgg 2880 cagggtcgga acaggagagc gcacgaggga gcttccgggg ggaaacgcct ggtatcttta 2940 tagtcctgtc gggtttcgcc acctctggct tgagcgtcga tttttgtgat gctcgtcagg 3000 ggggcggagc ctatggaaaa acgcctgcgg tgctggcttc ttccggtgct ttgctttttg 3060 ctcacatgtt ctttccggct ttatcccctg attctgtgga taaccgtatt accgcctttg 3120 agtgagctga caccgctcgc cgcagtcgaa cgaccgagcg tagcgagtca gtgagcgagg 3180 aagcggaaga gcgccttatg tgacattttc tccttacgct ctgttgtgcc gttcggcatc 3240 ctgccctgag cgttatatct ctgtgctatt ttctacttca aagcgtgtct gtatgctgtt 3300 ctggag 3306 //