Mercurial > repos > pimarin > bakta
comparison test-data/TEST_1/TEST_1.gbff @ 0:4d315de96666 draft
"planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/bakta commit bf30715c881a622947d3d099d7a22e323e2ceef3-dirty"
| author | pimarin |
|---|---|
| date | Wed, 18 May 2022 11:13:45 +0000 |
| parents | |
| children | ca9e2125c5de |
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| -1:000000000000 | 0:4d315de96666 |
|---|---|
| 1 LOCUS contig_1 3306 bp DNA circular BCT 05-MAY-2022 | |
| 2 DEFINITION plasmid unnamed1, complete sequence. | |
| 3 ACCESSION contig_1 | |
| 4 VERSION contig_1 | |
| 5 KEYWORDS . | |
| 6 SOURCE None | |
| 7 ORGANISM . | |
| 8 . | |
| 9 COMMENT Annotated with Bakta | |
| 10 Software: v1.4.0 | |
| 11 Database: v3.0 | |
| 12 DOI: 10.1099/mgen.0.000685 | |
| 13 URL: github.com/oschwengers/bakta | |
| 14 | |
| 15 ##Genome Annotation Summary:## | |
| 16 Annotation Date :: 05/05/2022, 15:12:51 | |
| 17 Annotation Pipeline :: Bakta | |
| 18 Annotation Software version :: v1.4.0 | |
| 19 Annotation Database version :: v3.0 | |
| 20 CDSs :: 3 | |
| 21 tRNAs :: 0 | |
| 22 tmRNAs :: 0 | |
| 23 rRNAs :: 0 | |
| 24 ncRNAs :: 0 | |
| 25 regulatory ncRNAs :: 0 | |
| 26 CRISPR Arrays :: 0 | |
| 27 oriCs/oriVs :: 0 | |
| 28 oriTs :: 0 | |
| 29 gaps :: 0 | |
| 30 FEATURES Location/Qualifiers | |
| 31 source 1..3306 | |
| 32 /mol_type="genomic DNA" | |
| 33 /plasmid="unnamed1" | |
| 34 gene <2..736 | |
| 35 /locus_tag="DOGAIA_00005" | |
| 36 CDS <2..736 | |
| 37 /product="hypothetical protein" | |
| 38 /locus_tag="DOGAIA_00005" | |
| 39 /translation="SSASSCSFSHMVACSSASSASSFSSSVRLWLFMNPAMLSAVCCCL | |
| 40 FIFLFSPFCLSSASCDYIAHHFSTVLPPVFCRRTFQSDNTVTAKKQQCFVGNSNLQTGQ | |
| 41 DVQLLYRAYMHAITITLVRASPRHPMSDTEPCFMTKRSGSNTRRRAISRPVRLTAEEDQ | |
| 42 EIRKRAAECGKTVSGFLRAAALGKKVNSLTDDRVLKEVMRLGALQKKLFIDGKRVGDRE | |
| 43 YAEVLIAITEYHRALLSRLMAD" | |
| 44 /codon_start=1 | |
| 45 /transl_table=11 | |
| 46 /protein_id="gnl|Bakta|DOGAIA_00005" | |
| 47 /inference="ab initio prediction:Prodigal:2.6" | |
| 48 gene complement(971..1351) | |
| 49 /locus_tag="DOGAIA_00010" | |
| 50 CDS complement(971..1351) | |
| 51 /product="hypothetical protein" | |
| 52 /locus_tag="DOGAIA_00010" | |
| 53 /translation="MKKDKKYQIEAIKNKDKTLFIVYATDIYSPSEFFSKIESDLKKKK | |
| 54 SKGDVFFDLIIPNGGKKDRYVYTSFNGEKFSSYTLNKVTKTDEYNDLSELSASFFKKNF | |
| 55 DKINVNLLSKATSFALKKGIPI" | |
| 56 /codon_start=1 | |
| 57 /transl_table=11 | |
| 58 /protein_id="gnl|Bakta|DOGAIA_00010" | |
| 59 /inference="ab initio prediction:Prodigal:2.6" | |
| 60 gene complement(1348..2388) | |
| 61 /locus_tag="DOGAIA_00015" | |
| 62 CDS complement(1348..2388) | |
| 63 /product="hypothetical protein" | |
| 64 /locus_tag="DOGAIA_00015" | |
| 65 /translation="MAQNPFKALNINIDKIESALTQNGVTNYSSNVKNERETHISGTYK | |
| 66 GIDFLIKLMPSGGNTTIGRASGQNNTYFDEIALIIKENCLYSDTKNFEYTIPKFSDDDR | |
| 67 ANLFEFLSEEGITITEDNNNDPNCKHQYIMTTSNGDRVRAKIYKRGSIQFQGKYLQIAS | |
| 68 LINDFMCSILNMKEIVEQKNKEFNVDIKKETIESELHSKLPKSIDKIHEDIKKQLSCSL | |
| 69 IMKKIDVEMEDYSTYCFSALRAIEGFIYQILNDVCNPSSSKNLGEYFTENKPKYIIREI | |
| 70 HQETINGEIAEVLCECYTYWHENRHGLFHMKPGIADTKTINKLESIAIIDTVCQLIDGG | |
| 71 VARLKL" | |
| 72 /codon_start=1 | |
| 73 /transl_table=11 | |
| 74 /protein_id="gnl|Bakta|DOGAIA_00015" | |
| 75 /inference="ab initio prediction:Prodigal:2.6" | |
| 76 ORIGIN | |
| 77 1 ttcttctgcg agttcgtgca gcttctcaca catggtggcc tgctcgtcag catcgagtgc | |
| 78 61 gtccagtttt tcgagcagcg tcaggctctg gctttttatg aatcccgcca tgttgagtgc | |
| 79 121 agtttgctgc tgcttgttca tctttctgtt ttctccgttc tgtctgtcat ctgcgtcgtg | |
| 80 181 tgattatatc gcgcaccact tttcgaccgt cttaccgccg gtattctgcc gacggacatt | |
| 81 241 tcagtcagac aacactgtca ctgccaaaaa acagcagtgc tttgttggta attcgaactt | |
| 82 301 gcagacagga caggatgtgc aattgttata ccgcgcatac atgcacgcta ttacaattac | |
| 83 361 cctggtcagg gcttcgcccc gacaccccat gtcagatacg gagccatgtt ttatgacaaa | |
| 84 421 acgaagtgga agtaatacgc gcaggcgggc tatcagtcgc cctgttcgtc tgacggcaga | |
| 85 481 agaagaccag gaaatcagaa aaagggctgc tgaatgcggc aagaccgttt ctggtttttt | |
| 86 541 acgggcggca gctctcggta agaaagttaa ctcactgact gatgaccggg tgctgaaaga | |
| 87 601 agttatgcga ctgggggcgt tgcagaaaaa actctttatc gacggcaagc gtgtcgggga | |
| 88 661 cagagagtat gcggaggtgc tgatcgctat tacggagtat caccgtgccc tgttatccag | |
| 89 721 gcttatggca gattagcttc ccggagagaa actgtcgaaa acagacggta tgaacgccgt | |
| 90 781 aagcccccaa accgatcgcc attcactttc atgcatagct atgcagtgag ctgaaagcga | |
| 91 841 tcctgacgca tttttccggt ttaccccggg gaaaacatct ctttttgcgg tgtctgcgtc | |
| 92 901 agaatcgcgt tcagcgcgtt ttggcggtgc gcgtaatgag acgttatggt aaatgtcttc | |
| 93 961 tggcttgata ttatattgga atgccttttt tcaaagcaaa tgatgtggct ttggatagaa | |
| 94 1021 ggtttacgtt gatcttatca aagttttttt taaagaacga agccgagagc tcagataaat | |
| 95 1081 cattatattc atcagttttc gtaactttgt ttaatgtgta acttgaaaac ttctcgccat | |
| 96 1141 taaatgacgt atagacgtaa cgatcttttt ttccaccgtt aggaattatt aaatcaaaaa | |
| 97 1201 aaacatcacc cttgcttttc tttttcttca agtcggattc gatttttgag aaaaattcgc | |
| 98 1261 tcgggctata aatatcagta gcatagacaa taaataaagt tttatcttta ttttttattg | |
| 99 1321 cttctatttg atatttttta tcttttttca taatttcaac ctagctacgc caccatctat | |
| 100 1381 taattggcaa acggtatcga tgattgcgat tgattctaat ttgttaattg tcttcgtgtc | |
| 101 1441 agctattcct ggtttcatat gaaacaaacc atgcctgttc tcatgccagt aagtgtagca | |
| 102 1501 ttcacacaaa acttccgcta tttcaccatt tatagtttct tggtgtattt ctctgattat | |
| 103 1561 atatttgggt ttgttttcag tgaagtattc gccaaggttc tttgatgatg atggattgca | |
| 104 1621 aacatcatta agtatttgat atataaagcc ttctatggct cttaatgcag agaagcagta | |
| 105 1681 tgttgagtaa tcttccattt cgacatctat ttttttcatt attagcgagc atgatagctg | |
| 106 1741 ttttttgata tcttcatgga ttttatcgat gctttttggt agtttgctat gcaactcgga | |
| 107 1801 ctcaatagtt tcttttttta tgtcaacatt aaattcttta tttttttgtt cgacaatctc | |
| 108 1861 tttcatgttt agtattgagc acatgaaatc gttaatcaaa ctcgcgattt gaaggtattt | |
| 109 1921 tccttggaat tgaatagagc cgcgcttgta aatttttgcc ctgaccctgt caccattgct | |
| 110 1981 ggtggtcata atatattggt gtttacaatt aggatcgtta ttattatctt ctgttattgt | |
| 111 2041 tatcccctct tcagaaagaa attcaaatag atttgccctg tcatcatcac tgaattttgg | |
| 112 2101 aatggtgtat tcaaagttct ttgtgtctga atacaaacag ttttctttta taatcaaggc | |
| 113 2161 gatttcatca aagtaagtgt tattttgccc agacgctctt ccgatagtgg tatttccgcc | |
| 114 2221 tgatggcatt agttttatta agaagtctat tcctttatat gtgccagata tgtgagtttc | |
| 115 2281 tctttcgttt tttacattag aggaatagtt tgtgacgcca ttctgcgtca gagcagactc | |
| 116 2341 aatcttgtca atattgatat ttagtgcttt aaacgggttc tgtgccattg ggtcaatccg | |
| 117 2401 ttgttttttt tgaatatgta cagatcttgt ttttttgtca acggaatagc tgttcgttga | |
| 118 2461 cttgatagac cgattgattc atcatctcat aaataaagaa aaaccaccgc taccaacggt | |
| 119 2521 ggttttctca aggttcgctg agctaccaac tctttgaacc aaggtaactg gcttggagga | |
| 120 2581 gcgcagtcac caaaatctgt tctttcagtt tagccttaac aggtgcataa cttcaagaca | |
| 121 2641 aactcctcta aatcagttac caatggctgc tgccagtggc gataagtcgt gtcttaccgg | |
| 122 2701 gttggactca agacgatagt taccggataa ggcgcagcgg tcgggctgaa cggggggttc | |
| 123 2761 gtgcacacag cccagcttgg agcgaacgac ctacaccgaa ctgagatacc aacagcgtga | |
| 124 2821 gctatgagaa agcgccacgc ttcccgaagg gagaaaggcg gacaggtatc cggtaagtgg | |
| 125 2881 cagggtcgga acaggagagc gcacgaggga gcttccgggg ggaaacgcct ggtatcttta | |
| 126 2941 tagtcctgtc gggtttcgcc acctctggct tgagcgtcga tttttgtgat gctcgtcagg | |
| 127 3001 ggggcggagc ctatggaaaa acgcctgcgg tgctggcttc ttccggtgct ttgctttttg | |
| 128 3061 ctcacatgtt ctttccggct ttatcccctg attctgtgga taaccgtatt accgcctttg | |
| 129 3121 agtgagctga caccgctcgc cgcagtcgaa cgaccgagcg tagcgagtca gtgagcgagg | |
| 130 3181 aagcggaaga gcgccttatg tgacattttc tccttacgct ctgttgtgcc gttcggcatc | |
| 131 3241 ctgccctgag cgttatatct ctgtgctatt ttctacttca aagcgtgtct gtatgctgtt | |
| 132 3301 ctggag | |
| 133 // |