Mercurial > repos > pimarin > bakta
diff test-data/TEST_1/TEST_1.gbff @ 0:4d315de96666 draft
"planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/bakta commit bf30715c881a622947d3d099d7a22e323e2ceef3-dirty"
author | pimarin |
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date | Wed, 18 May 2022 11:13:45 +0000 |
parents | |
children | ca9e2125c5de |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/TEST_1/TEST_1.gbff Wed May 18 11:13:45 2022 +0000 @@ -0,0 +1,133 @@ +LOCUS contig_1 3306 bp DNA circular BCT 05-MAY-2022 +DEFINITION plasmid unnamed1, complete sequence. +ACCESSION contig_1 +VERSION contig_1 +KEYWORDS . +SOURCE None + ORGANISM . + . +COMMENT Annotated with Bakta + Software: v1.4.0 + Database: v3.0 + DOI: 10.1099/mgen.0.000685 + URL: github.com/oschwengers/bakta + + ##Genome Annotation Summary:## + Annotation Date :: 05/05/2022, 15:12:51 + Annotation Pipeline :: Bakta + Annotation Software version :: v1.4.0 + Annotation Database version :: v3.0 + CDSs :: 3 + tRNAs :: 0 + tmRNAs :: 0 + rRNAs :: 0 + ncRNAs :: 0 + regulatory ncRNAs :: 0 + CRISPR Arrays :: 0 + oriCs/oriVs :: 0 + oriTs :: 0 + gaps :: 0 +FEATURES Location/Qualifiers + source 1..3306 + /mol_type="genomic DNA" + /plasmid="unnamed1" + gene <2..736 + /locus_tag="DOGAIA_00005" + CDS <2..736 + /product="hypothetical protein" + /locus_tag="DOGAIA_00005" + /translation="SSASSCSFSHMVACSSASSASSFSSSVRLWLFMNPAMLSAVCCCL + FIFLFSPFCLSSASCDYIAHHFSTVLPPVFCRRTFQSDNTVTAKKQQCFVGNSNLQTGQ + DVQLLYRAYMHAITITLVRASPRHPMSDTEPCFMTKRSGSNTRRRAISRPVRLTAEEDQ + EIRKRAAECGKTVSGFLRAAALGKKVNSLTDDRVLKEVMRLGALQKKLFIDGKRVGDRE + YAEVLIAITEYHRALLSRLMAD" + /codon_start=1 + /transl_table=11 + /protein_id="gnl|Bakta|DOGAIA_00005" + /inference="ab initio prediction:Prodigal:2.6" + gene complement(971..1351) + /locus_tag="DOGAIA_00010" + CDS complement(971..1351) + /product="hypothetical protein" + /locus_tag="DOGAIA_00010" + /translation="MKKDKKYQIEAIKNKDKTLFIVYATDIYSPSEFFSKIESDLKKKK + SKGDVFFDLIIPNGGKKDRYVYTSFNGEKFSSYTLNKVTKTDEYNDLSELSASFFKKNF + DKINVNLLSKATSFALKKGIPI" + /codon_start=1 + /transl_table=11 + /protein_id="gnl|Bakta|DOGAIA_00010" + /inference="ab initio prediction:Prodigal:2.6" + gene complement(1348..2388) + /locus_tag="DOGAIA_00015" + CDS complement(1348..2388) + /product="hypothetical protein" + /locus_tag="DOGAIA_00015" + /translation="MAQNPFKALNINIDKIESALTQNGVTNYSSNVKNERETHISGTYK + GIDFLIKLMPSGGNTTIGRASGQNNTYFDEIALIIKENCLYSDTKNFEYTIPKFSDDDR + ANLFEFLSEEGITITEDNNNDPNCKHQYIMTTSNGDRVRAKIYKRGSIQFQGKYLQIAS + LINDFMCSILNMKEIVEQKNKEFNVDIKKETIESELHSKLPKSIDKIHEDIKKQLSCSL + IMKKIDVEMEDYSTYCFSALRAIEGFIYQILNDVCNPSSSKNLGEYFTENKPKYIIREI + HQETINGEIAEVLCECYTYWHENRHGLFHMKPGIADTKTINKLESIAIIDTVCQLIDGG + VARLKL" + /codon_start=1 + /transl_table=11 + /protein_id="gnl|Bakta|DOGAIA_00015" + /inference="ab initio prediction:Prodigal:2.6" +ORIGIN + 1 ttcttctgcg agttcgtgca gcttctcaca catggtggcc tgctcgtcag catcgagtgc + 61 gtccagtttt tcgagcagcg tcaggctctg gctttttatg aatcccgcca tgttgagtgc + 121 agtttgctgc tgcttgttca tctttctgtt ttctccgttc tgtctgtcat ctgcgtcgtg + 181 tgattatatc gcgcaccact tttcgaccgt cttaccgccg gtattctgcc gacggacatt + 241 tcagtcagac aacactgtca ctgccaaaaa acagcagtgc tttgttggta attcgaactt + 301 gcagacagga caggatgtgc aattgttata ccgcgcatac atgcacgcta ttacaattac + 361 cctggtcagg gcttcgcccc gacaccccat gtcagatacg gagccatgtt ttatgacaaa + 421 acgaagtgga agtaatacgc gcaggcgggc tatcagtcgc cctgttcgtc tgacggcaga + 481 agaagaccag gaaatcagaa aaagggctgc tgaatgcggc aagaccgttt ctggtttttt + 541 acgggcggca gctctcggta agaaagttaa ctcactgact gatgaccggg tgctgaaaga + 601 agttatgcga ctgggggcgt tgcagaaaaa actctttatc gacggcaagc gtgtcgggga + 661 cagagagtat gcggaggtgc tgatcgctat tacggagtat caccgtgccc tgttatccag + 721 gcttatggca gattagcttc ccggagagaa actgtcgaaa acagacggta tgaacgccgt + 781 aagcccccaa accgatcgcc attcactttc atgcatagct atgcagtgag ctgaaagcga + 841 tcctgacgca tttttccggt ttaccccggg gaaaacatct ctttttgcgg tgtctgcgtc + 901 agaatcgcgt tcagcgcgtt ttggcggtgc gcgtaatgag acgttatggt aaatgtcttc + 961 tggcttgata ttatattgga atgccttttt tcaaagcaaa tgatgtggct ttggatagaa + 1021 ggtttacgtt gatcttatca aagttttttt taaagaacga agccgagagc tcagataaat + 1081 cattatattc atcagttttc gtaactttgt ttaatgtgta acttgaaaac ttctcgccat + 1141 taaatgacgt atagacgtaa cgatcttttt ttccaccgtt aggaattatt aaatcaaaaa + 1201 aaacatcacc cttgcttttc tttttcttca agtcggattc gatttttgag aaaaattcgc + 1261 tcgggctata aatatcagta gcatagacaa taaataaagt tttatcttta ttttttattg + 1321 cttctatttg atatttttta tcttttttca taatttcaac ctagctacgc caccatctat + 1381 taattggcaa acggtatcga tgattgcgat tgattctaat ttgttaattg tcttcgtgtc + 1441 agctattcct ggtttcatat gaaacaaacc atgcctgttc tcatgccagt aagtgtagca + 1501 ttcacacaaa acttccgcta tttcaccatt tatagtttct tggtgtattt ctctgattat + 1561 atatttgggt ttgttttcag tgaagtattc gccaaggttc tttgatgatg atggattgca + 1621 aacatcatta agtatttgat atataaagcc ttctatggct cttaatgcag agaagcagta + 1681 tgttgagtaa tcttccattt cgacatctat ttttttcatt attagcgagc atgatagctg + 1741 ttttttgata tcttcatgga ttttatcgat gctttttggt agtttgctat gcaactcgga + 1801 ctcaatagtt tcttttttta tgtcaacatt aaattcttta tttttttgtt cgacaatctc + 1861 tttcatgttt agtattgagc acatgaaatc gttaatcaaa ctcgcgattt gaaggtattt + 1921 tccttggaat tgaatagagc cgcgcttgta aatttttgcc ctgaccctgt caccattgct + 1981 ggtggtcata atatattggt gtttacaatt aggatcgtta ttattatctt ctgttattgt + 2041 tatcccctct tcagaaagaa attcaaatag atttgccctg tcatcatcac tgaattttgg + 2101 aatggtgtat tcaaagttct ttgtgtctga atacaaacag ttttctttta taatcaaggc + 2161 gatttcatca aagtaagtgt tattttgccc agacgctctt ccgatagtgg tatttccgcc + 2221 tgatggcatt agttttatta agaagtctat tcctttatat gtgccagata tgtgagtttc + 2281 tctttcgttt tttacattag aggaatagtt tgtgacgcca ttctgcgtca gagcagactc + 2341 aatcttgtca atattgatat ttagtgcttt aaacgggttc tgtgccattg ggtcaatccg + 2401 ttgttttttt tgaatatgta cagatcttgt ttttttgtca acggaatagc tgttcgttga + 2461 cttgatagac cgattgattc atcatctcat aaataaagaa aaaccaccgc taccaacggt + 2521 ggttttctca aggttcgctg agctaccaac tctttgaacc aaggtaactg gcttggagga + 2581 gcgcagtcac caaaatctgt tctttcagtt tagccttaac aggtgcataa cttcaagaca + 2641 aactcctcta aatcagttac caatggctgc tgccagtggc gataagtcgt gtcttaccgg + 2701 gttggactca agacgatagt taccggataa ggcgcagcgg tcgggctgaa cggggggttc + 2761 gtgcacacag cccagcttgg agcgaacgac ctacaccgaa ctgagatacc aacagcgtga + 2821 gctatgagaa agcgccacgc ttcccgaagg gagaaaggcg gacaggtatc cggtaagtgg + 2881 cagggtcgga acaggagagc gcacgaggga gcttccgggg ggaaacgcct ggtatcttta + 2941 tagtcctgtc gggtttcgcc acctctggct tgagcgtcga tttttgtgat gctcgtcagg + 3001 ggggcggagc ctatggaaaa acgcctgcgg tgctggcttc ttccggtgct ttgctttttg + 3061 ctcacatgtt ctttccggct ttatcccctg attctgtgga taaccgtatt accgcctttg + 3121 agtgagctga caccgctcgc cgcagtcgaa cgaccgagcg tagcgagtca gtgagcgagg + 3181 aagcggaaga gcgccttatg tgacattttc tccttacgct ctgttgtgcc gttcggcatc + 3241 ctgccctgag cgttatatct ctgtgctatt ttctacttca aagcgtgtct gtatgctgtt + 3301 ctggag +//