diff test-data/TEST_1/TEST_1.gbff @ 0:4d315de96666 draft

"planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/bakta commit bf30715c881a622947d3d099d7a22e323e2ceef3-dirty"
author pimarin
date Wed, 18 May 2022 11:13:45 +0000
parents
children ca9e2125c5de
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/TEST_1/TEST_1.gbff	Wed May 18 11:13:45 2022 +0000
@@ -0,0 +1,133 @@
+LOCUS       contig_1                3306 bp    DNA     circular BCT 05-MAY-2022
+DEFINITION  plasmid unnamed1, complete sequence.
+ACCESSION   contig_1
+VERSION     contig_1
+KEYWORDS    .
+SOURCE      None
+  ORGANISM  .
+            .
+COMMENT     Annotated with Bakta
+            Software: v1.4.0
+            Database: v3.0
+            DOI: 10.1099/mgen.0.000685
+            URL: github.com/oschwengers/bakta
+            
+            ##Genome Annotation Summary:##
+            Annotation Date                :: 05/05/2022, 15:12:51
+            Annotation Pipeline            :: Bakta
+            Annotation Software version    ::  v1.4.0
+            Annotation Database version    ::  v3.0
+            CDSs                           ::     3
+            tRNAs                          ::     0
+            tmRNAs                         ::     0
+            rRNAs                          ::     0
+            ncRNAs                         ::     0
+            regulatory ncRNAs              ::     0
+            CRISPR Arrays                  ::     0
+            oriCs/oriVs                    ::     0
+            oriTs                          ::     0
+            gaps                           ::     0
+FEATURES             Location/Qualifiers
+     source          1..3306
+                     /mol_type="genomic DNA"
+                     /plasmid="unnamed1"
+     gene            <2..736
+                     /locus_tag="DOGAIA_00005"
+     CDS             <2..736
+                     /product="hypothetical protein"
+                     /locus_tag="DOGAIA_00005"
+                     /translation="SSASSCSFSHMVACSSASSASSFSSSVRLWLFMNPAMLSAVCCCL
+                     FIFLFSPFCLSSASCDYIAHHFSTVLPPVFCRRTFQSDNTVTAKKQQCFVGNSNLQTGQ
+                     DVQLLYRAYMHAITITLVRASPRHPMSDTEPCFMTKRSGSNTRRRAISRPVRLTAEEDQ
+                     EIRKRAAECGKTVSGFLRAAALGKKVNSLTDDRVLKEVMRLGALQKKLFIDGKRVGDRE
+                     YAEVLIAITEYHRALLSRLMAD"
+                     /codon_start=1
+                     /transl_table=11
+                     /protein_id="gnl|Bakta|DOGAIA_00005"
+                     /inference="ab initio prediction:Prodigal:2.6"
+     gene            complement(971..1351)
+                     /locus_tag="DOGAIA_00010"
+     CDS             complement(971..1351)
+                     /product="hypothetical protein"
+                     /locus_tag="DOGAIA_00010"
+                     /translation="MKKDKKYQIEAIKNKDKTLFIVYATDIYSPSEFFSKIESDLKKKK
+                     SKGDVFFDLIIPNGGKKDRYVYTSFNGEKFSSYTLNKVTKTDEYNDLSELSASFFKKNF
+                     DKINVNLLSKATSFALKKGIPI"
+                     /codon_start=1
+                     /transl_table=11
+                     /protein_id="gnl|Bakta|DOGAIA_00010"
+                     /inference="ab initio prediction:Prodigal:2.6"
+     gene            complement(1348..2388)
+                     /locus_tag="DOGAIA_00015"
+     CDS             complement(1348..2388)
+                     /product="hypothetical protein"
+                     /locus_tag="DOGAIA_00015"
+                     /translation="MAQNPFKALNINIDKIESALTQNGVTNYSSNVKNERETHISGTYK
+                     GIDFLIKLMPSGGNTTIGRASGQNNTYFDEIALIIKENCLYSDTKNFEYTIPKFSDDDR
+                     ANLFEFLSEEGITITEDNNNDPNCKHQYIMTTSNGDRVRAKIYKRGSIQFQGKYLQIAS
+                     LINDFMCSILNMKEIVEQKNKEFNVDIKKETIESELHSKLPKSIDKIHEDIKKQLSCSL
+                     IMKKIDVEMEDYSTYCFSALRAIEGFIYQILNDVCNPSSSKNLGEYFTENKPKYIIREI
+                     HQETINGEIAEVLCECYTYWHENRHGLFHMKPGIADTKTINKLESIAIIDTVCQLIDGG
+                     VARLKL"
+                     /codon_start=1
+                     /transl_table=11
+                     /protein_id="gnl|Bakta|DOGAIA_00015"
+                     /inference="ab initio prediction:Prodigal:2.6"
+ORIGIN
+        1 ttcttctgcg agttcgtgca gcttctcaca catggtggcc tgctcgtcag catcgagtgc
+       61 gtccagtttt tcgagcagcg tcaggctctg gctttttatg aatcccgcca tgttgagtgc
+      121 agtttgctgc tgcttgttca tctttctgtt ttctccgttc tgtctgtcat ctgcgtcgtg
+      181 tgattatatc gcgcaccact tttcgaccgt cttaccgccg gtattctgcc gacggacatt
+      241 tcagtcagac aacactgtca ctgccaaaaa acagcagtgc tttgttggta attcgaactt
+      301 gcagacagga caggatgtgc aattgttata ccgcgcatac atgcacgcta ttacaattac
+      361 cctggtcagg gcttcgcccc gacaccccat gtcagatacg gagccatgtt ttatgacaaa
+      421 acgaagtgga agtaatacgc gcaggcgggc tatcagtcgc cctgttcgtc tgacggcaga
+      481 agaagaccag gaaatcagaa aaagggctgc tgaatgcggc aagaccgttt ctggtttttt
+      541 acgggcggca gctctcggta agaaagttaa ctcactgact gatgaccggg tgctgaaaga
+      601 agttatgcga ctgggggcgt tgcagaaaaa actctttatc gacggcaagc gtgtcgggga
+      661 cagagagtat gcggaggtgc tgatcgctat tacggagtat caccgtgccc tgttatccag
+      721 gcttatggca gattagcttc ccggagagaa actgtcgaaa acagacggta tgaacgccgt
+      781 aagcccccaa accgatcgcc attcactttc atgcatagct atgcagtgag ctgaaagcga
+      841 tcctgacgca tttttccggt ttaccccggg gaaaacatct ctttttgcgg tgtctgcgtc
+      901 agaatcgcgt tcagcgcgtt ttggcggtgc gcgtaatgag acgttatggt aaatgtcttc
+      961 tggcttgata ttatattgga atgccttttt tcaaagcaaa tgatgtggct ttggatagaa
+     1021 ggtttacgtt gatcttatca aagttttttt taaagaacga agccgagagc tcagataaat
+     1081 cattatattc atcagttttc gtaactttgt ttaatgtgta acttgaaaac ttctcgccat
+     1141 taaatgacgt atagacgtaa cgatcttttt ttccaccgtt aggaattatt aaatcaaaaa
+     1201 aaacatcacc cttgcttttc tttttcttca agtcggattc gatttttgag aaaaattcgc
+     1261 tcgggctata aatatcagta gcatagacaa taaataaagt tttatcttta ttttttattg
+     1321 cttctatttg atatttttta tcttttttca taatttcaac ctagctacgc caccatctat
+     1381 taattggcaa acggtatcga tgattgcgat tgattctaat ttgttaattg tcttcgtgtc
+     1441 agctattcct ggtttcatat gaaacaaacc atgcctgttc tcatgccagt aagtgtagca
+     1501 ttcacacaaa acttccgcta tttcaccatt tatagtttct tggtgtattt ctctgattat
+     1561 atatttgggt ttgttttcag tgaagtattc gccaaggttc tttgatgatg atggattgca
+     1621 aacatcatta agtatttgat atataaagcc ttctatggct cttaatgcag agaagcagta
+     1681 tgttgagtaa tcttccattt cgacatctat ttttttcatt attagcgagc atgatagctg
+     1741 ttttttgata tcttcatgga ttttatcgat gctttttggt agtttgctat gcaactcgga
+     1801 ctcaatagtt tcttttttta tgtcaacatt aaattcttta tttttttgtt cgacaatctc
+     1861 tttcatgttt agtattgagc acatgaaatc gttaatcaaa ctcgcgattt gaaggtattt
+     1921 tccttggaat tgaatagagc cgcgcttgta aatttttgcc ctgaccctgt caccattgct
+     1981 ggtggtcata atatattggt gtttacaatt aggatcgtta ttattatctt ctgttattgt
+     2041 tatcccctct tcagaaagaa attcaaatag atttgccctg tcatcatcac tgaattttgg
+     2101 aatggtgtat tcaaagttct ttgtgtctga atacaaacag ttttctttta taatcaaggc
+     2161 gatttcatca aagtaagtgt tattttgccc agacgctctt ccgatagtgg tatttccgcc
+     2221 tgatggcatt agttttatta agaagtctat tcctttatat gtgccagata tgtgagtttc
+     2281 tctttcgttt tttacattag aggaatagtt tgtgacgcca ttctgcgtca gagcagactc
+     2341 aatcttgtca atattgatat ttagtgcttt aaacgggttc tgtgccattg ggtcaatccg
+     2401 ttgttttttt tgaatatgta cagatcttgt ttttttgtca acggaatagc tgttcgttga
+     2461 cttgatagac cgattgattc atcatctcat aaataaagaa aaaccaccgc taccaacggt
+     2521 ggttttctca aggttcgctg agctaccaac tctttgaacc aaggtaactg gcttggagga
+     2581 gcgcagtcac caaaatctgt tctttcagtt tagccttaac aggtgcataa cttcaagaca
+     2641 aactcctcta aatcagttac caatggctgc tgccagtggc gataagtcgt gtcttaccgg
+     2701 gttggactca agacgatagt taccggataa ggcgcagcgg tcgggctgaa cggggggttc
+     2761 gtgcacacag cccagcttgg agcgaacgac ctacaccgaa ctgagatacc aacagcgtga
+     2821 gctatgagaa agcgccacgc ttcccgaagg gagaaaggcg gacaggtatc cggtaagtgg
+     2881 cagggtcgga acaggagagc gcacgaggga gcttccgggg ggaaacgcct ggtatcttta
+     2941 tagtcctgtc gggtttcgcc acctctggct tgagcgtcga tttttgtgat gctcgtcagg
+     3001 ggggcggagc ctatggaaaa acgcctgcgg tgctggcttc ttccggtgct ttgctttttg
+     3061 ctcacatgtt ctttccggct ttatcccctg attctgtgga taaccgtatt accgcctttg
+     3121 agtgagctga caccgctcgc cgcagtcgaa cgaccgagcg tagcgagtca gtgagcgagg
+     3181 aagcggaaga gcgccttatg tgacattttc tccttacgct ctgttgtgcc gttcggcatc
+     3241 ctgccctgag cgttatatct ctgtgctatt ttctacttca aagcgtgtct gtatgctgtt
+     3301 ctggag
+//