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comparison test-data/TEST_1/TEST_1.embl @ 0:4d315de96666 draft

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"planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/bakta commit bf30715c881a622947d3d099d7a22e323e2ceef3-dirty"
author pimarin
date Wed, 18 May 2022 11:13:45 +0000
parents
children ca9e2125c5de
comparison
equal deleted inserted replaced
-1:000000000000 0:4d315de96666
1 ID contig_1; ; circular; DNA; ; PRO; 3306 BP.
2 XX
3 AC contig_1;
4 XX
5 DE plasmid unnamed1, complete sequence
6 XX
7 OS .
8 OC .
9 XX
10 CC Annotated with Bakta
11 CC Software: v1.4.0
12 CC Database: v3.0
13 CC DOI: 10.1099/mgen.0.000685
14 CC URL: github.com/oschwengers/bakta
15 CC
16 CC ##Genome Annotation Summary:##
17 CC Annotation Date :: 05/05/2022, 15:12:51
18 CC Annotation Pipeline :: Bakta
19 CC Annotation Software version :: v1.4.0
20 CC Annotation Database version :: v3.0
21 CC CDSs :: 3
22 CC tRNAs :: 0
23 CC tmRNAs :: 0
24 CC rRNAs :: 0
25 CC ncRNAs :: 0
26 CC regulatory ncRNAs :: 0
27 CC CRISPR Arrays :: 0
28 CC oriCs/oriVs :: 0
29 CC oriTs :: 0
30 CC gaps :: 0
31 XX
32 FH Key Location/Qualifiers
33 FH
34 FT source 1..3306
35 FT /mol_type="genomic DNA"
36 FT /plasmid="unnamed1"
37 FT gene <2..736
38 FT /locus_tag="DOGAIA_00005"
39 FT CDS <2..736
40 FT /product="hypothetical protein"
41 FT /locus_tag="DOGAIA_00005"
42 FT /translation="SSASSCSFSHMVACSSASSASSFSSSVRLWLFMNPAMLSAVCCCL
43 FT FIFLFSPFCLSSASCDYIAHHFSTVLPPVFCRRTFQSDNTVTAKKQQCFVGNSNLQTGQ
44 FT DVQLLYRAYMHAITITLVRASPRHPMSDTEPCFMTKRSGSNTRRRAISRPVRLTAEEDQ
45 FT EIRKRAAECGKTVSGFLRAAALGKKVNSLTDDRVLKEVMRLGALQKKLFIDGKRVGDRE
46 FT YAEVLIAITEYHRALLSRLMAD"
47 FT /codon_start=1
48 FT /transl_table=11
49 FT /protein_id="gnl|Bakta|DOGAIA_00005"
50 FT /inference="ab initio prediction:Prodigal:2.6"
51 FT gene complement(971..1351)
52 FT /locus_tag="DOGAIA_00010"
53 FT CDS complement(971..1351)
54 FT /product="hypothetical protein"
55 FT /locus_tag="DOGAIA_00010"
56 FT /translation="MKKDKKYQIEAIKNKDKTLFIVYATDIYSPSEFFSKIESDLKKKK
57 FT SKGDVFFDLIIPNGGKKDRYVYTSFNGEKFSSYTLNKVTKTDEYNDLSELSASFFKKNF
58 FT DKINVNLLSKATSFALKKGIPI"
59 FT /codon_start=1
60 FT /transl_table=11
61 FT /protein_id="gnl|Bakta|DOGAIA_00010"
62 FT /inference="ab initio prediction:Prodigal:2.6"
63 FT gene complement(1348..2388)
64 FT /locus_tag="DOGAIA_00015"
65 FT CDS complement(1348..2388)
66 FT /product="hypothetical protein"
67 FT /locus_tag="DOGAIA_00015"
68 FT /translation="MAQNPFKALNINIDKIESALTQNGVTNYSSNVKNERETHISGTYK
69 FT GIDFLIKLMPSGGNTTIGRASGQNNTYFDEIALIIKENCLYSDTKNFEYTIPKFSDDDR
70 FT ANLFEFLSEEGITITEDNNNDPNCKHQYIMTTSNGDRVRAKIYKRGSIQFQGKYLQIAS
71 FT LINDFMCSILNMKEIVEQKNKEFNVDIKKETIESELHSKLPKSIDKIHEDIKKQLSCSL
72 FT IMKKIDVEMEDYSTYCFSALRAIEGFIYQILNDVCNPSSSKNLGEYFTENKPKYIIREI
73 FT HQETINGEIAEVLCECYTYWHENRHGLFHMKPGIADTKTINKLESIAIIDTVCQLIDGG
74 FT VARLKL"
75 FT /codon_start=1
76 FT /transl_table=11
77 FT /protein_id="gnl|Bakta|DOGAIA_00015"
78 FT /inference="ab initio prediction:Prodigal:2.6"
79 XX
80 SQ Sequence 3306 BP; 797 A; 692 C; 743 G; 1074 T; 0 other;
81 ttcttctgcg agttcgtgca gcttctcaca catggtggcc tgctcgtcag catcgagtgc 60
82 gtccagtttt tcgagcagcg tcaggctctg gctttttatg aatcccgcca tgttgagtgc 120
83 agtttgctgc tgcttgttca tctttctgtt ttctccgttc tgtctgtcat ctgcgtcgtg 180
84 tgattatatc gcgcaccact tttcgaccgt cttaccgccg gtattctgcc gacggacatt 240
85 tcagtcagac aacactgtca ctgccaaaaa acagcagtgc tttgttggta attcgaactt 300
86 gcagacagga caggatgtgc aattgttata ccgcgcatac atgcacgcta ttacaattac 360
87 cctggtcagg gcttcgcccc gacaccccat gtcagatacg gagccatgtt ttatgacaaa 420
88 acgaagtgga agtaatacgc gcaggcgggc tatcagtcgc cctgttcgtc tgacggcaga 480
89 agaagaccag gaaatcagaa aaagggctgc tgaatgcggc aagaccgttt ctggtttttt 540
90 acgggcggca gctctcggta agaaagttaa ctcactgact gatgaccggg tgctgaaaga 600
91 agttatgcga ctgggggcgt tgcagaaaaa actctttatc gacggcaagc gtgtcgggga 660
92 cagagagtat gcggaggtgc tgatcgctat tacggagtat caccgtgccc tgttatccag 720
93 gcttatggca gattagcttc ccggagagaa actgtcgaaa acagacggta tgaacgccgt 780
94 aagcccccaa accgatcgcc attcactttc atgcatagct atgcagtgag ctgaaagcga 840
95 tcctgacgca tttttccggt ttaccccggg gaaaacatct ctttttgcgg tgtctgcgtc 900
96 agaatcgcgt tcagcgcgtt ttggcggtgc gcgtaatgag acgttatggt aaatgtcttc 960
97 tggcttgata ttatattgga atgccttttt tcaaagcaaa tgatgtggct ttggatagaa 1020
98 ggtttacgtt gatcttatca aagttttttt taaagaacga agccgagagc tcagataaat 1080
99 cattatattc atcagttttc gtaactttgt ttaatgtgta acttgaaaac ttctcgccat 1140
100 taaatgacgt atagacgtaa cgatcttttt ttccaccgtt aggaattatt aaatcaaaaa 1200
101 aaacatcacc cttgcttttc tttttcttca agtcggattc gatttttgag aaaaattcgc 1260
102 tcgggctata aatatcagta gcatagacaa taaataaagt tttatcttta ttttttattg 1320
103 cttctatttg atatttttta tcttttttca taatttcaac ctagctacgc caccatctat 1380
104 taattggcaa acggtatcga tgattgcgat tgattctaat ttgttaattg tcttcgtgtc 1440
105 agctattcct ggtttcatat gaaacaaacc atgcctgttc tcatgccagt aagtgtagca 1500
106 ttcacacaaa acttccgcta tttcaccatt tatagtttct tggtgtattt ctctgattat 1560
107 atatttgggt ttgttttcag tgaagtattc gccaaggttc tttgatgatg atggattgca 1620
108 aacatcatta agtatttgat atataaagcc ttctatggct cttaatgcag agaagcagta 1680
109 tgttgagtaa tcttccattt cgacatctat ttttttcatt attagcgagc atgatagctg 1740
110 ttttttgata tcttcatgga ttttatcgat gctttttggt agtttgctat gcaactcgga 1800
111 ctcaatagtt tcttttttta tgtcaacatt aaattcttta tttttttgtt cgacaatctc 1860
112 tttcatgttt agtattgagc acatgaaatc gttaatcaaa ctcgcgattt gaaggtattt 1920
113 tccttggaat tgaatagagc cgcgcttgta aatttttgcc ctgaccctgt caccattgct 1980
114 ggtggtcata atatattggt gtttacaatt aggatcgtta ttattatctt ctgttattgt 2040
115 tatcccctct tcagaaagaa attcaaatag atttgccctg tcatcatcac tgaattttgg 2100
116 aatggtgtat tcaaagttct ttgtgtctga atacaaacag ttttctttta taatcaaggc 2160
117 gatttcatca aagtaagtgt tattttgccc agacgctctt ccgatagtgg tatttccgcc 2220
118 tgatggcatt agttttatta agaagtctat tcctttatat gtgccagata tgtgagtttc 2280
119 tctttcgttt tttacattag aggaatagtt tgtgacgcca ttctgcgtca gagcagactc 2340
120 aatcttgtca atattgatat ttagtgcttt aaacgggttc tgtgccattg ggtcaatccg 2400
121 ttgttttttt tgaatatgta cagatcttgt ttttttgtca acggaatagc tgttcgttga 2460
122 cttgatagac cgattgattc atcatctcat aaataaagaa aaaccaccgc taccaacggt 2520
123 ggttttctca aggttcgctg agctaccaac tctttgaacc aaggtaactg gcttggagga 2580
124 gcgcagtcac caaaatctgt tctttcagtt tagccttaac aggtgcataa cttcaagaca 2640
125 aactcctcta aatcagttac caatggctgc tgccagtggc gataagtcgt gtcttaccgg 2700
126 gttggactca agacgatagt taccggataa ggcgcagcgg tcgggctgaa cggggggttc 2760
127 gtgcacacag cccagcttgg agcgaacgac ctacaccgaa ctgagatacc aacagcgtga 2820
128 gctatgagaa agcgccacgc ttcccgaagg gagaaaggcg gacaggtatc cggtaagtgg 2880
129 cagggtcgga acaggagagc gcacgaggga gcttccgggg ggaaacgcct ggtatcttta 2940
130 tagtcctgtc gggtttcgcc acctctggct tgagcgtcga tttttgtgat gctcgtcagg 3000
131 ggggcggagc ctatggaaaa acgcctgcgg tgctggcttc ttccggtgct ttgctttttg 3060
132 ctcacatgtt ctttccggct ttatcccctg attctgtgga taaccgtatt accgcctttg 3120
133 agtgagctga caccgctcgc cgcagtcgaa cgaccgagcg tagcgagtca gtgagcgagg 3180
134 aagcggaaga gcgccttatg tgacattttc tccttacgct ctgttgtgcc gttcggcatc 3240
135 ctgccctgag cgttatatct ctgtgctatt ttctacttca aagcgtgtct gtatgctgtt 3300
136 ctggag 3306
137 //