Mercurial > repos > pimarin > bakta

annotate test-data/TEST_1/TEST_1.gbff @ 11:f93f54a21132 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit ed22b0f3b7b651e240154a08c9313585def1cfe5
author pimarin
date Mon, 13 Feb 2023 11:37:06 +0000
parents ed4bc0577be6
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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11
f93f54a21132 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit ed22b0f3b7b651e240154a08c9313585def1cfe5
pimarin
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1 LOCUS contig_1 1330 bp DNA circular BCT 10-FEB-2023
5
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2 DEFINITION plasmid unnamed1, complete sequence.
44fb905481f0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit a7dcdae8bccb5a8d7abdb9c6d058f9bd7c6f6c15
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3 ACCESSION contig_1
44fb905481f0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit a7dcdae8bccb5a8d7abdb9c6d058f9bd7c6f6c15
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4 VERSION contig_1
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5 KEYWORDS .
44fb905481f0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit a7dcdae8bccb5a8d7abdb9c6d058f9bd7c6f6c15
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6 SOURCE None
44fb905481f0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit a7dcdae8bccb5a8d7abdb9c6d058f9bd7c6f6c15
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7 ORGANISM .
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8 .
44fb905481f0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit a7dcdae8bccb5a8d7abdb9c6d058f9bd7c6f6c15
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9 COMMENT Annotated with Bakta
10
ed4bc0577be6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit 274e2f6740711cf7709d44951b9ff70c199d5be7
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10 Software: v1.6.1
5
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11 Database: v4.0
44fb905481f0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit a7dcdae8bccb5a8d7abdb9c6d058f9bd7c6f6c15
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12 DOI: 10.1099/mgen.0.000685
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13 URL: github.com/oschwengers/bakta
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14
44fb905481f0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit a7dcdae8bccb5a8d7abdb9c6d058f9bd7c6f6c15
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15 ##Genome Annotation Summary:##
11
f93f54a21132 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit ed22b0f3b7b651e240154a08c9313585def1cfe5
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16 Annotation Date :: 02/10/2023, 11:57:30
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17 Annotation Pipeline :: Bakta
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ed4bc0577be6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit 274e2f6740711cf7709d44951b9ff70c199d5be7
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18 Annotation Software version :: v1.6.1
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19 Annotation Database version :: v4.0
44fb905481f0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit a7dcdae8bccb5a8d7abdb9c6d058f9bd7c6f6c15
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20 CDSs :: 2
44fb905481f0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit a7dcdae8bccb5a8d7abdb9c6d058f9bd7c6f6c15
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21 tRNAs :: 0
44fb905481f0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit a7dcdae8bccb5a8d7abdb9c6d058f9bd7c6f6c15
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22 tmRNAs :: 0
44fb905481f0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit a7dcdae8bccb5a8d7abdb9c6d058f9bd7c6f6c15
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23 rRNAs :: 0
44fb905481f0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit a7dcdae8bccb5a8d7abdb9c6d058f9bd7c6f6c15
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24 ncRNAs :: 0
44fb905481f0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit a7dcdae8bccb5a8d7abdb9c6d058f9bd7c6f6c15
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25 regulatory ncRNAs :: 0
44fb905481f0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit a7dcdae8bccb5a8d7abdb9c6d058f9bd7c6f6c15
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26 CRISPR Arrays :: 0
44fb905481f0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit a7dcdae8bccb5a8d7abdb9c6d058f9bd7c6f6c15
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27 oriCs/oriVs :: 0
44fb905481f0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit a7dcdae8bccb5a8d7abdb9c6d058f9bd7c6f6c15
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28 oriTs :: 0
44fb905481f0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit a7dcdae8bccb5a8d7abdb9c6d058f9bd7c6f6c15
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29 gaps :: 0
44fb905481f0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit a7dcdae8bccb5a8d7abdb9c6d058f9bd7c6f6c15
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30 pseudogenes :: 0
44fb905481f0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit a7dcdae8bccb5a8d7abdb9c6d058f9bd7c6f6c15
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31 FEATURES Location/Qualifiers
44fb905481f0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit a7dcdae8bccb5a8d7abdb9c6d058f9bd7c6f6c15
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32 source 1..1330
44fb905481f0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit a7dcdae8bccb5a8d7abdb9c6d058f9bd7c6f6c15
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33 /mol_type="genomic DNA"
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34 /plasmid="unnamed1"
44fb905481f0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit a7dcdae8bccb5a8d7abdb9c6d058f9bd7c6f6c15
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35 gene 413..736
44fb905481f0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit a7dcdae8bccb5a8d7abdb9c6d058f9bd7c6f6c15
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36 /locus_tag="IHHALP_00005"
44fb905481f0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit a7dcdae8bccb5a8d7abdb9c6d058f9bd7c6f6c15
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37 CDS 413..736
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38 /product="hypothetical protein"
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39 /locus_tag="IHHALP_00005"
44fb905481f0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit a7dcdae8bccb5a8d7abdb9c6d058f9bd7c6f6c15
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40 /protein_id="gnl|Bakta|IHHALP_00005"
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41 /translation="MTKRSGSNTRRRAISRPVRLTAEEDQEIRKRAAECGKTVSGFLRA
44fb905481f0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit a7dcdae8bccb5a8d7abdb9c6d058f9bd7c6f6c15
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42 AALGKKVNSLTDDRVLKEVMRLGALQKKLFIDGKRVGDREYAEVLIAITEYHRALLSRL
44fb905481f0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit a7dcdae8bccb5a8d7abdb9c6d058f9bd7c6f6c15
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43 MAD"
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44 /codon_start=1
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45 /transl_table=11
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46 /inference="ab initio prediction:Prodigal:2.6"
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47 gene complement(join(971..1330,1..141))
44fb905481f0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit a7dcdae8bccb5a8d7abdb9c6d058f9bd7c6f6c15
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48 /locus_tag="IHHALP_00010"
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49 CDS complement(join(971..1330,1..141))
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50 /product="hypothetical protein"
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51 /locus_tag="IHHALP_00010"
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52 /protein_id="gnl|Bakta|IHHALP_00010"
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53 /translation="MNKQQQTALNMAGFIKSQSLTLLEKLDALDADEQATMCEKLHELA
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54 EEQIEAIKNKDKTLFIVYATDIYSPSEFFSKIESDLKKKKSKGDVFFDLIIPNGGKKDR
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55 YVYTSFNGEKFSSYTLNKVTKTDEYNDLSELSASFFKKNFDKINVNLLSKATSFALKKG
44fb905481f0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit a7dcdae8bccb5a8d7abdb9c6d058f9bd7c6f6c15
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56 IPI"
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57 /codon_start=1
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58 /transl_table=11
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59 /inference="ab initio prediction:Prodigal:2.6"
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60 ORIGIN
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61 1 ttcttctgcg agttcgtgca gcttctcaca catggtggcc tgctcgtcag catcgagtgc
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62 61 gtccagtttt tcgagcagcg tcaggctctg gctttttatg aatcccgcca tgttgagtgc
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63 121 agtttgctgc tgcttgttca tctttctgtt ttctccgttc tgtctgtcat ctgcgtcgtg
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64 181 tgattatatc gcgcaccact tttcgaccgt cttaccgccg gtattctgcc gacggacatt
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65 241 tcagtcagac aacactgtca ctgccaaaaa acagcagtgc tttgttggta attcgaactt
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66 301 gcagacagga caggatgtgc aattgttata ccgcgcatac atgcacgcta ttacaattac
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67 361 cctggtcagg gcttcgcccc gacaccccat gtcagatacg gagccatgtt ttatgacaaa
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68 421 acgaagtgga agtaatacgc gcaggcgggc tatcagtcgc cctgttcgtc tgacggcaga
44fb905481f0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit a7dcdae8bccb5a8d7abdb9c6d058f9bd7c6f6c15
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69 481 agaagaccag gaaatcagaa aaagggctgc tgaatgcggc aagaccgttt ctggtttttt
44fb905481f0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit a7dcdae8bccb5a8d7abdb9c6d058f9bd7c6f6c15
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70 541 acgggcggca gctctcggta agaaagttaa ctcactgact gatgaccggg tgctgaaaga
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71 601 agttatgcga ctgggggcgt tgcagaaaaa actctttatc gacggcaagc gtgtcgggga
44fb905481f0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit a7dcdae8bccb5a8d7abdb9c6d058f9bd7c6f6c15
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72 661 cagagagtat gcggaggtgc tgatcgctat tacggagtat caccgtgccc tgttatccag
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73 721 gcttatggca gattagcttc ccggagagaa actgtcgaaa acagacggta tgaacgccgt
44fb905481f0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit a7dcdae8bccb5a8d7abdb9c6d058f9bd7c6f6c15
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74 781 aagcccccaa accgatcgcc attcactttc atgcatagct atgcagtgag ctgaaagcga
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75 841 tcctgacgca tttttccggt ttaccccggg gaaaacatct ctttttgcgg tgtctgcgtc
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76 901 agaatcgcgt tcagcgcgtt ttggcggtgc gcgtaatgag acgttatggt aaatgtcttc
44fb905481f0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit a7dcdae8bccb5a8d7abdb9c6d058f9bd7c6f6c15
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77 961 tggcttgata ttatattgga atgccttttt tcaaagcaaa tgatgtggct ttggatagaa
44fb905481f0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit a7dcdae8bccb5a8d7abdb9c6d058f9bd7c6f6c15
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78 1021 ggtttacgtt gatcttatca aagttttttt taaagaacga agccgagagc tcagataaat
44fb905481f0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit a7dcdae8bccb5a8d7abdb9c6d058f9bd7c6f6c15
pimarin
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79 1081 cattatattc atcagttttc gtaactttgt ttaatgtgta acttgaaaac ttctcgccat
44fb905481f0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit a7dcdae8bccb5a8d7abdb9c6d058f9bd7c6f6c15
pimarin
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80 1141 taaatgacgt atagacgtaa cgatcttttt ttccaccgtt aggaattatt aaatcaaaaa
44fb905481f0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit a7dcdae8bccb5a8d7abdb9c6d058f9bd7c6f6c15
pimarin
parents:
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81 1201 aaacatcacc cttgcttttc tttttcttca agtcggattc gatttttgag aaaaattcgc
44fb905481f0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit a7dcdae8bccb5a8d7abdb9c6d058f9bd7c6f6c15
pimarin
parents:
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82 1261 tcgggctata aatatcagta gcatagacaa taaataaagt tttatcttta ttttttattg
44fb905481f0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit a7dcdae8bccb5a8d7abdb9c6d058f9bd7c6f6c15
pimarin
parents:
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83 1321 cttctatttg
44fb905481f0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit a7dcdae8bccb5a8d7abdb9c6d058f9bd7c6f6c15
pimarin
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84 //