Mercurial > repos > pimarin > bakta

annotate test-data/tmp/TEST_1.gbff @ 5:44fb905481f0 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit a7dcdae8bccb5a8d7abdb9c6d058f9bd7c6f6c15
author pimarin
date Thu, 12 Jan 2023 11:25:17 +0000
parents eea334d9988b
children
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3
eea334d9988b planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit 73af464cc860250c3fa3dd433602283ab5a44f53-dirty
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1 <<<<<<< HEAD:tools/bakta/test-data/TEST_1/TEST_1.gbff
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2 LOCUS contig_1 1330 bp DNA circular BCT 19-DEC-2022
eea334d9988b planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit 73af464cc860250c3fa3dd433602283ab5a44f53-dirty
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3 =======
eea334d9988b planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit 73af464cc860250c3fa3dd433602283ab5a44f53-dirty
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4 <<<<<<< HEAD:tools/bakta/test-data/TEST_4/TEST_4.gbff
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5 LOCUS p2 1330 bp DNA circular BCT 16-SEP-2022
eea334d9988b planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit 73af464cc860250c3fa3dd433602283ab5a44f53-dirty
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6 DEFINITION plasmid pOSAK1, complete sequence.
eea334d9988b planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit 73af464cc860250c3fa3dd433602283ab5a44f53-dirty
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7 ACCESSION p2
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8 VERSION p2
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9 =======
eea334d9988b planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit 73af464cc860250c3fa3dd433602283ab5a44f53-dirty
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10 LOCUS contig_1 1330 bp DNA circular BCT 21-DEC-2022
eea334d9988b planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit 73af464cc860250c3fa3dd433602283ab5a44f53-dirty
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11 >>>>>>> 17d4de2b8 (update bakta for plot output and to reduce number of output files):tools/bakta/test-data/tmp/TEST_1.gbff
eea334d9988b planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit 73af464cc860250c3fa3dd433602283ab5a44f53-dirty
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12 DEFINITION plasmid unnamed1, complete sequence.
eea334d9988b planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit 73af464cc860250c3fa3dd433602283ab5a44f53-dirty
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13 ACCESSION contig_1
eea334d9988b planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit 73af464cc860250c3fa3dd433602283ab5a44f53-dirty
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14 VERSION contig_1
eea334d9988b planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit 73af464cc860250c3fa3dd433602283ab5a44f53-dirty
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15 >>>>>>> f1bb03fb2 (update bakta for plot output and to reduce number of output files):tools/bakta/test-data/tmp/TEST_1.gbff
eea334d9988b planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit 73af464cc860250c3fa3dd433602283ab5a44f53-dirty
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16 KEYWORDS .
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17 SOURCE None
eea334d9988b planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit 73af464cc860250c3fa3dd433602283ab5a44f53-dirty
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18 ORGANISM .
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19 .
eea334d9988b planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit 73af464cc860250c3fa3dd433602283ab5a44f53-dirty
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20 COMMENT Annotated with Bakta
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21 Software: v1.6.1
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22 Database: v4.0
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23 DOI: 10.1099/mgen.0.000685
eea334d9988b planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit 73af464cc860250c3fa3dd433602283ab5a44f53-dirty
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24 URL: github.com/oschwengers/bakta
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25
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26 ##Genome Annotation Summary:##
eea334d9988b planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit 73af464cc860250c3fa3dd433602283ab5a44f53-dirty
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27 <<<<<<< HEAD:tools/bakta/test-data/tmp/TEST_1.gbff
eea334d9988b planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit 73af464cc860250c3fa3dd433602283ab5a44f53-dirty
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28 <<<<<<< HEAD:tools/bakta/test-data/TEST_1/TEST_1.gbff
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29 Annotation Date :: 12/19/2022, 10:20:25
eea334d9988b planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit 73af464cc860250c3fa3dd433602283ab5a44f53-dirty
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30 =======
eea334d9988b planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit 73af464cc860250c3fa3dd433602283ab5a44f53-dirty
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31 <<<<<<< HEAD:tools/bakta/test-data/TEST_4/TEST_4.gbff
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32 Annotation Date :: 09/16/2022, 07:32:50
eea334d9988b planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit 73af464cc860250c3fa3dd433602283ab5a44f53-dirty
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33 =======
eea334d9988b planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit 73af464cc860250c3fa3dd433602283ab5a44f53-dirty
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34 Annotation Date :: 12/21/2022, 14:34:39
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35 >>>>>>> f1bb03fb2 (update bakta for plot output and to reduce number of output files):tools/bakta/test-data/tmp/TEST_1.gbff
eea334d9988b planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit 73af464cc860250c3fa3dd433602283ab5a44f53-dirty
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36 >>>>>>> 17d4de2b8 (update bakta for plot output and to reduce number of output files):tools/bakta/test-data/tmp/TEST_1.gbff
eea334d9988b planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit 73af464cc860250c3fa3dd433602283ab5a44f53-dirty
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37 =======
eea334d9988b planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit 73af464cc860250c3fa3dd433602283ab5a44f53-dirty
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38 Annotation Date :: 12/21/2022, 19:53:31
eea334d9988b planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit 73af464cc860250c3fa3dd433602283ab5a44f53-dirty
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39 >>>>>>> 195c8410c (change option for plot):tools/bakta/test-data/TEST_1/TEST_1.gbff
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40 Annotation Pipeline :: Bakta
eea334d9988b planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit 73af464cc860250c3fa3dd433602283ab5a44f53-dirty
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41 Annotation Software version :: v1.6.1
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42 Annotation Database version :: v4.0
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43 CDSs :: 2
eea334d9988b planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit 73af464cc860250c3fa3dd433602283ab5a44f53-dirty
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44 tRNAs :: 0
eea334d9988b planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit 73af464cc860250c3fa3dd433602283ab5a44f53-dirty
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45 tmRNAs :: 0
eea334d9988b planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit 73af464cc860250c3fa3dd433602283ab5a44f53-dirty
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46 rRNAs :: 0
eea334d9988b planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit 73af464cc860250c3fa3dd433602283ab5a44f53-dirty
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47 ncRNAs :: 0
eea334d9988b planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit 73af464cc860250c3fa3dd433602283ab5a44f53-dirty
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48 regulatory ncRNAs :: 0
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49 CRISPR Arrays :: 0
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50 oriCs/oriVs :: 0
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51 oriTs :: 0
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52 gaps :: 0
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53 pseudogenes :: 0
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54 FEATURES Location/Qualifiers
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55 source 1..1330
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56 /mol_type="genomic DNA"
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57 /plasmid="unnamed1"
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58 gene 413..736
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59 /locus_tag="IHHALP_00005"
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60 CDS 413..736
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61 /product="hypothetical protein"
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62 /locus_tag="IHHALP_00005"
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63 /protein_id="gnl|Bakta|IHHALP_00005"
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64 /translation="MTKRSGSNTRRRAISRPVRLTAEEDQEIRKRAAECGKTVSGFLRA
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65 AALGKKVNSLTDDRVLKEVMRLGALQKKLFIDGKRVGDREYAEVLIAITEYHRALLSRL
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66 MAD"
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67 /codon_start=1
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68 /transl_table=11
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69 /inference="ab initio prediction:Prodigal:2.6"
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70 gene complement(join(971..1330,1..141))
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71 /locus_tag="IHHALP_00010"
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72 CDS complement(join(971..1330,1..141))
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73 /product="hypothetical protein"
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74 /locus_tag="IHHALP_00010"
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75 /protein_id="gnl|Bakta|IHHALP_00010"
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76 /translation="MNKQQQTALNMAGFIKSQSLTLLEKLDALDADEQATMCEKLHELA
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77 EEQIEAIKNKDKTLFIVYATDIYSPSEFFSKIESDLKKKKSKGDVFFDLIIPNGGKKDR
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78 YVYTSFNGEKFSSYTLNKVTKTDEYNDLSELSASFFKKNFDKINVNLLSKATSFALKKG
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79 IPI"
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80 /codon_start=1
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81 /transl_table=11
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82 /inference="ab initio prediction:Prodigal:2.6"
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83 ORIGIN
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84 1 ttcttctgcg agttcgtgca gcttctcaca catggtggcc tgctcgtcag catcgagtgc
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85 61 gtccagtttt tcgagcagcg tcaggctctg gctttttatg aatcccgcca tgttgagtgc
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86 121 agtttgctgc tgcttgttca tctttctgtt ttctccgttc tgtctgtcat ctgcgtcgtg
eea334d9988b planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit 73af464cc860250c3fa3dd433602283ab5a44f53-dirty
pimarin
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87 181 tgattatatc gcgcaccact tttcgaccgt cttaccgccg gtattctgcc gacggacatt
eea334d9988b planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit 73af464cc860250c3fa3dd433602283ab5a44f53-dirty
pimarin
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88 241 tcagtcagac aacactgtca ctgccaaaaa acagcagtgc tttgttggta attcgaactt
eea334d9988b planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit 73af464cc860250c3fa3dd433602283ab5a44f53-dirty
pimarin
parents:
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89 301 gcagacagga caggatgtgc aattgttata ccgcgcatac atgcacgcta ttacaattac
eea334d9988b planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit 73af464cc860250c3fa3dd433602283ab5a44f53-dirty
pimarin
parents:
diff changeset
90 361 cctggtcagg gcttcgcccc gacaccccat gtcagatacg gagccatgtt ttatgacaaa
eea334d9988b planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit 73af464cc860250c3fa3dd433602283ab5a44f53-dirty
pimarin
parents:
diff changeset
91 421 acgaagtgga agtaatacgc gcaggcgggc tatcagtcgc cctgttcgtc tgacggcaga
eea334d9988b planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit 73af464cc860250c3fa3dd433602283ab5a44f53-dirty
pimarin
parents:
diff changeset
92 481 agaagaccag gaaatcagaa aaagggctgc tgaatgcggc aagaccgttt ctggtttttt
eea334d9988b planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit 73af464cc860250c3fa3dd433602283ab5a44f53-dirty
pimarin
parents:
diff changeset
93 541 acgggcggca gctctcggta agaaagttaa ctcactgact gatgaccggg tgctgaaaga
eea334d9988b planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit 73af464cc860250c3fa3dd433602283ab5a44f53-dirty
pimarin
parents:
diff changeset
94 601 agttatgcga ctgggggcgt tgcagaaaaa actctttatc gacggcaagc gtgtcgggga
eea334d9988b planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit 73af464cc860250c3fa3dd433602283ab5a44f53-dirty
pimarin
parents:
diff changeset
95 661 cagagagtat gcggaggtgc tgatcgctat tacggagtat caccgtgccc tgttatccag
eea334d9988b planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit 73af464cc860250c3fa3dd433602283ab5a44f53-dirty
pimarin
parents:
diff changeset
96 721 gcttatggca gattagcttc ccggagagaa actgtcgaaa acagacggta tgaacgccgt
eea334d9988b planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit 73af464cc860250c3fa3dd433602283ab5a44f53-dirty
pimarin
parents:
diff changeset
97 781 aagcccccaa accgatcgcc attcactttc atgcatagct atgcagtgag ctgaaagcga
eea334d9988b planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit 73af464cc860250c3fa3dd433602283ab5a44f53-dirty
pimarin
parents:
diff changeset
98 841 tcctgacgca tttttccggt ttaccccggg gaaaacatct ctttttgcgg tgtctgcgtc
eea334d9988b planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit 73af464cc860250c3fa3dd433602283ab5a44f53-dirty
pimarin
parents:
diff changeset
99 901 agaatcgcgt tcagcgcgtt ttggcggtgc gcgtaatgag acgttatggt aaatgtcttc
eea334d9988b planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit 73af464cc860250c3fa3dd433602283ab5a44f53-dirty
pimarin
parents:
diff changeset
100 961 tggcttgata ttatattgga atgccttttt tcaaagcaaa tgatgtggct ttggatagaa
eea334d9988b planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit 73af464cc860250c3fa3dd433602283ab5a44f53-dirty
pimarin
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diff changeset
101 1021 ggtttacgtt gatcttatca aagttttttt taaagaacga agccgagagc tcagataaat
eea334d9988b planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit 73af464cc860250c3fa3dd433602283ab5a44f53-dirty
pimarin
parents:
diff changeset
102 1081 cattatattc atcagttttc gtaactttgt ttaatgtgta acttgaaaac ttctcgccat
eea334d9988b planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit 73af464cc860250c3fa3dd433602283ab5a44f53-dirty
pimarin
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diff changeset
103 1141 taaatgacgt atagacgtaa cgatcttttt ttccaccgtt aggaattatt aaatcaaaaa
eea334d9988b planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit 73af464cc860250c3fa3dd433602283ab5a44f53-dirty
pimarin
parents:
diff changeset
104 1201 aaacatcacc cttgcttttc tttttcttca agtcggattc gatttttgag aaaaattcgc
eea334d9988b planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit 73af464cc860250c3fa3dd433602283ab5a44f53-dirty
pimarin
parents:
diff changeset
105 1261 tcgggctata aatatcagta gcatagacaa taaataaagt tttatcttta ttttttattg
eea334d9988b planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit 73af464cc860250c3fa3dd433602283ab5a44f53-dirty
pimarin
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diff changeset
106 1321 cttctatttg
eea334d9988b planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit 73af464cc860250c3fa3dd433602283ab5a44f53-dirty
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107 //