Mercurial > repos > pimarin > abromics_galaxy_json_extractor

annotate test-data/refseqmasher/refsesqmasher.tsv @ 0:c49ec8c0b046 draft

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planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
author pimarin
date Sun, 04 Jun 2023 17:16:20 +0000
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c49ec8c0b046 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
pimarin
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1 sample top_taxonomy_name distance pvalue matching full_taxonomy taxonomic_species taxonomic_genus taxonomic_family taxonomic_order taxonomic_class taxonomic_phylum taxonomic_superkingdom subspecies serovar plasmid bioproject biosample taxid assembly_accession match_id
c49ec8c0b046 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
pimarin
parents:
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2 10_Enterococcus_faecalis_S17_L001 Enterococcus faecalis EnGen0295 0.00802142 0.0 314/400 Bacteria; Terrabacteria group; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus; faecalis; EnGen0295 Enterococcus faecalis Enterococcus Enterococcaceae Lactobacillales Bacilli Firmicutes Bacteria PRJNA224116 SAMN00809230 1158669 GCF_000395135.1 ./rcn/refseq-NZ-1158669-PRJNA224116-SAMN00809230-GCF_000395135.1-.-Enterococcus_faecalis_EnGen0295.fna
c49ec8c0b046 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
pimarin
parents:
diff changeset
3 10_Enterococcus_faecalis_S17_L001 Enterococcus faecalis EnGen0425 0.00869982 0.0 308/400 Bacteria; Terrabacteria group; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus; faecalis; EnGen0425 Enterococcus faecalis Enterococcus Enterococcaceae Lactobacillales Bacilli Firmicutes Bacteria PRJNA224116 SAMN02333901 1391495 GCF_000519925.1 ./rcn/refseq-NZ-1391495-PRJNA224116-SAMN02333901-GCF_000519925.1-.-Enterococcus_faecalis_EnGen0425.fna
c49ec8c0b046 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
pimarin
parents:
diff changeset
4 10_Enterococcus_faecalis_S17_L001 Enterococcus faecalis ATCC 4200 0.00916272 0.0 304/400 Bacteria; Terrabacteria group; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus; faecalis; ATCC 4200 Enterococcus faecalis Enterococcus Enterococcaceae Lactobacillales Bacilli Firmicutes Bacteria PRJNA224116 SAMN02595252 565642 GCF_000157195.1 ./rcn/refseq-NZ-565642-PRJNA224116-SAMN02595252-GCF_000157195.1-.-Enterococcus_faecalis_ATCC_4200.fna
c49ec8c0b046 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
pimarin
parents:
diff changeset
5 10_Enterococcus_faecalis_S17_L001 Enterococcus faecalis ATCC 29212 0.00975375 0.0 299/400 Bacteria; Terrabacteria group; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus; faecalis; ATCC 29212 Enterococcus faecalis Enterococcus Enterococcaceae Lactobacillales Bacilli Firmicutes Bacteria PRJNA224116 SAMN02870637 1201292 GCF_000742975.1 ./rcn/refseq-NZ-1201292-PRJNA224116-SAMN02870637-GCF_000742975.1-.-Enterococcus_faecalis_ATCC_29212.fna
c49ec8c0b046 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
pimarin
parents:
diff changeset
6 10_Enterococcus_faecalis_S17_L001 Enterococcus faecalis EnGen0417 0.0101152 0.0 296/400 Bacteria; Terrabacteria group; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus; faecalis; EnGen0417 Enterococcus faecalis Enterococcus Enterococcaceae Lactobacillales Bacilli Firmicutes Bacteria PRJNA224116 SAMN02333893 1391487 GCF_000519765.1 ./rcn/refseq-NZ-1391487-PRJNA224116-SAMN02333893-GCF_000519765.1-.-Enterococcus_faecalis_EnGen0417.fna