Mercurial > repos > pimarin > abromics_galaxy_json_extractor

annotate test-data/integronfinder2/results.summary @ 0:c49ec8c0b046 draft

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planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
author pimarin
date Sun, 04 Jun 2023 17:16:20 +0000
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c49ec8c0b046 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
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1 # cmd: integron_finder --cpu 4 --local-max --eagle-eyes --promoter-attI --pdf --gbk --keep-tmp --outdir /storage/scratch/piemari/60579123/integronfinder/integronfinder_10_Enterococcus_faecalis_S17_L001 /storage/scratch/piemari/60579123/integronfinder/10_Enterococcus_faecalis_S17_L001.fasta
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2 ID_replicon CALIN complete In0 topology size
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3 contig00001 0 0 0 lin 436224
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4 contig00002 0 0 0 lin 252900
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5 contig00003 0 0 0 lin 206370
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6 contig00004 0 0 0 lin 168397
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7 contig00005 0 0 0 lin 132811
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8 contig00006 0 0 0 lin 115359
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9 contig00007 0 0 0 lin 113419
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11 contig00009 0 0 0 lin 97190
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12 contig00010 0 0 0 lin 92075
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13 contig00011 0 0 0 lin 86662
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14 contig00012 0 0 0 lin 82418
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15 contig00013 0 0 0 lin 81741
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16 contig00014 0 0 0 lin 81694
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