Mercurial > repos > pimarin > abromics_galaxy_json_extractor

annotate test-data/integronfinder2/results.integrons @ 0:c49ec8c0b046 draft

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planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
author pimarin
date Sun, 04 Jun 2023 17:16:20 +0000
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c49ec8c0b046 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
pimarin
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1 # cmd: integron_finder --cpu 4 --local-max --eagle-eyes --promoter-attI --pdf --gbk --keep-tmp --outdir /storage/scratch/piemari/60579123/integronfinder/integronfinder_10_Enterococcus_faecalis_S17_L001 /storage/scratch/piemari/60579123/integronfinder/10_Enterococcus_faecalis_S17_L001.fasta
c49ec8c0b046 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
pimarin
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2 ID_integron ID_replicon element pos_beg pos_end strand evalue type_elt annotation model type default distance_2attC considered_topology
c49ec8c0b046 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
pimarin
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3 integron_01 contig00017 contig00017_42 41235 41546 -1 NA protein protein NA CALIN No NA lin
c49ec8c0b046 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
pimarin
parents:
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4 integron_01 contig00017 contig00017_43 41543 42391 -1 NA protein protein NA CALIN No NA lin
c49ec8c0b046 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
pimarin
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5 integron_01 contig00017 attc_001 41600 41701 -1 0.15 attC attC attc_4 CALIN No NA lin
c49ec8c0b046 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
pimarin
parents:
diff changeset
6 integron_01 contig00017 contig00017_44 42419 43705 -1 NA protein protein NA CALIN No NA lin
c49ec8c0b046 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
pimarin
parents:
diff changeset
7 integron_01 contig00017 contig00017_45 43702 45213 -1 NA protein protein NA CALIN No NA lin
c49ec8c0b046 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
pimarin
parents:
diff changeset
8 integron_01 contig00017 attc_002 44054 44100 -1 0.095 attC attC attc_4 CALIN No 2353.0 lin