Mercurial > repos > petrn > repeatexplorer
diff databases/0INFO.md @ 0:f6ebec6e235e draft
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author | petrn |
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date | Thu, 19 Dec 2019 13:46:43 +0000 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/databases/0INFO.md Thu Dec 19 13:46:43 2019 +0000 @@ -0,0 +1,9 @@ +# DATABASE FOLDER CONTENT # + +This folder contain fasta files sequence databases used for cluster annotation. +To run clustering, blast databases must be created from fasta files. This will be done automaticaly when make is run. +folder content: +dna_database.fasta - mitochondrial, plastid, rDNA genes, contaminants +protein_database.fasta - protein domains from transposable elements +tRNA_database.fasta - fragments from tRNA sequences for identification of Primer Binding Sites of transposable elements +