Mercurial > repos > petrn > repeatexplorer
comparison databases/0INFO.md @ 0:f6ebec6e235e draft
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| author | petrn |
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| date | Thu, 19 Dec 2019 13:46:43 +0000 |
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| -1:000000000000 | 0:f6ebec6e235e |
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| 1 # DATABASE FOLDER CONTENT # | |
| 2 | |
| 3 This folder contain fasta files sequence databases used for cluster annotation. | |
| 4 To run clustering, blast databases must be created from fasta files. This will be done automaticaly when make is run. | |
| 5 folder content: | |
| 6 dna_database.fasta - mitochondrial, plastid, rDNA genes, contaminants | |
| 7 protein_database.fasta - protein domains from transposable elements | |
| 8 tRNA_database.fasta - fragments from tRNA sequences for identification of Primer Binding Sites of transposable elements | |
| 9 |