Mercurial > repos > peterjc > samtools_depth

annotate test-data/sam_spec_padded.sam @ 1:821749d238ff draft default tip

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planemo upload for repository https://github.com/peterjc/pico_galaxy/tools/samtools_depth commit 3c6f0dca0e1318eecd1e07d177ffc5752b4f6c95
author peterjc
date Thu, 21 May 2015 10:49:49 -0400
parents 3a70e3e49db8
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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3a70e3e49db8 planemo upload for repository https://github.com/peterjc/pico_galaxy/tools/samtools_depth commit 005b5833177c31dbcfcad35690f96c267581a7e1
peterjc
parents:
diff changeset
1 @HD VN:1.5 SO:coordinate
3a70e3e49db8 planemo upload for repository https://github.com/peterjc/pico_galaxy/tools/samtools_depth commit 005b5833177c31dbcfcad35690f96c267581a7e1
peterjc
parents:
diff changeset
2 @SQ SN:ref LN:47
3a70e3e49db8 planemo upload for repository https://github.com/peterjc/pico_galaxy/tools/samtools_depth commit 005b5833177c31dbcfcad35690f96c267581a7e1
peterjc
parents:
diff changeset
3 ref 516 ref 1 0 14M2D31M * 0 0 AGCATGTTAGATAAGATAGCTGTGCTAGTAGGCAGTCAGCGCCAT *
3a70e3e49db8 planemo upload for repository https://github.com/peterjc/pico_galaxy/tools/samtools_depth commit 005b5833177c31dbcfcad35690f96c267581a7e1
peterjc
parents:
diff changeset
4 r001 99 ref 7 30 14M1D3M = 39 41 TTAGATAAAGGATACTG *
3a70e3e49db8 planemo upload for repository https://github.com/peterjc/pico_galaxy/tools/samtools_depth commit 005b5833177c31dbcfcad35690f96c267581a7e1
peterjc
parents:
diff changeset
5 * 768 ref 8 30 1M * 0 0 * * CT:Z:.;Warning;Note=Ref wrong?
3a70e3e49db8 planemo upload for repository https://github.com/peterjc/pico_galaxy/tools/samtools_depth commit 005b5833177c31dbcfcad35690f96c267581a7e1
peterjc
parents:
diff changeset
6 r002 0 ref 9 30 3S6M1D5M * 0 0 AAAAGATAAGGATA * PT:Z:1;4;+;homopolymer
3a70e3e49db8 planemo upload for repository https://github.com/peterjc/pico_galaxy/tools/samtools_depth commit 005b5833177c31dbcfcad35690f96c267581a7e1
peterjc
parents:
diff changeset
7 r003 0 ref 9 30 5H6M * 0 0 AGCTAA * NM:i:1
3a70e3e49db8 planemo upload for repository https://github.com/peterjc/pico_galaxy/tools/samtools_depth commit 005b5833177c31dbcfcad35690f96c267581a7e1
peterjc
parents:
diff changeset
8 r004 0 ref 18 30 6M14D5M * 0 0 ATAGCTTCAGC *
3a70e3e49db8 planemo upload for repository https://github.com/peterjc/pico_galaxy/tools/samtools_depth commit 005b5833177c31dbcfcad35690f96c267581a7e1
peterjc
parents:
diff changeset
9 r003 2064 ref 31 30 6H5M * 0 0 TAGGC * NM:i:0
3a70e3e49db8 planemo upload for repository https://github.com/peterjc/pico_galaxy/tools/samtools_depth commit 005b5833177c31dbcfcad35690f96c267581a7e1
peterjc
parents:
diff changeset
10 r001 147 ref 39 30 9M = 7 -41 CAGCGGCAT * NM:i:1