Mercurial > repos > peterjc > samtools_depth

diff test-data/sam_spec_padded.sam @ 0:3a70e3e49db8 draft

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planemo upload for repository https://github.com/peterjc/pico_galaxy/tools/samtools_depth commit 005b5833177c31dbcfcad35690f96c267581a7e1
author peterjc
date Wed, 13 May 2015 10:29:23 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/sam_spec_padded.sam	Wed May 13 10:29:23 2015 -0400
@@ -0,0 +1,10 @@
+@HD	VN:1.5	SO:coordinate
+@SQ	SN:ref	LN:47
+ref	516	ref	1	0	14M2D31M	*	0	0	AGCATGTTAGATAAGATAGCTGTGCTAGTAGGCAGTCAGCGCCAT	*
+r001	99	ref	7	30	14M1D3M	=	39	41	TTAGATAAAGGATACTG	*
+*	768	ref	8	30	1M	*	0	0	*	*	CT:Z:.;Warning;Note=Ref wrong?
+r002	0	ref	9	30	3S6M1D5M	*	0	0	AAAAGATAAGGATA	*	PT:Z:1;4;+;homopolymer
+r003	0	ref	9	30	5H6M	*	0	0	AGCTAA	*	NM:i:1
+r004	0	ref	18	30	6M14D5M	*	0	0	ATAGCTTCAGC	*
+r003	2064	ref	31	30	6H5M	*	0	0	TAGGC	*	NM:i:0
+r001	147	ref	39	30	9M	=	7	-41	CAGCGGCAT	*	NM:i:1