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annotate tool_dependencies.xml @ 4:8829b2c59aa6 draft

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MIRA 4.9.5 not on sourceforge anymore
author peterjc
date Mon, 08 Aug 2016 12:59:25 -0400
parents 645a9fb69d42
children
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="MIRA" version="4.9.5">
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4 <install version="1.0">
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5 <actions_group>
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6 <!-- Download the binaries for MIRA compatible with 64-bit OSX. -->
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7 <!-- Currently unavailable...
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8 <actions architecture="x86_64" os="darwin">
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9 <action type="download_by_url">http://downloads.sourceforge.net/project/mira-assembler/MIRA/development/mira_4.9.5_2_darwin14.3.0_x86_64_static.tar.bz2</action>
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10 <action type="move_directory_files">
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11 <source_directory>bin</source_directory>
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12 <destination_directory>$INSTALL_DIR</destination_directory>
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13 </action>
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14 </actions>
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15 -->
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16 <!-- Download the binaries for MIRA compatible with 64-bit Linux. -->
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17 <actions architecture="x86_64" os="linux">
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18 <action type="download_by_url" sha256sum="3848885cb041cd9bf7aa8f220dd3f084443f5060fa433b669f7d28880ba4c61f">https://depot.galaxyproject.org/software/mira/mira_4.9.5_linux_x64.tar.bz2</action>
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19 <action type="move_directory_files">
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20 <source_directory>bin</source_directory>
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21 <destination_directory>$INSTALL_DIR</destination_directory>
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22 </action>
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23 </actions>
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24 <!-- This actions tag is only processed if none of the above tags resulted in a successful installation. -->
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25 <actions>
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26 <action type="shell_command">echo "ERROR: Automated installation on your operating system and CPU architecture combination is not yet supported."</action>
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27 <action type="shell_command">echo "Your machine details (the output from 'uname' and 'arch'):"</action>
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28 <action type="shell_command">uname</action>
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29 <action type="shell_command">arch</action>
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30 <action type="shell_command">echo "If pre-compiled MIRA binaries are now available for this, please report this"</action>
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31 <action type="shell_command">echo "via https://github.com/peterjc/galaxy_mira/issues - thank you!"</action>
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32 <action type="shell_command">false</action>
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33 <!-- The 'false' command will return an error, so Galaxy should treat this as a failed install -->
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34 </actions>
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35 <!-- The $PATH environment variable is only set if one of the above <actions> tags resulted in a successful installation. -->
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36 <action type="set_environment">
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37 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR</environment_variable>
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38 </action>
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39 <!-- Note we append a trailing slash as currently expected by the wrapper XML file -->
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40 <action type="set_environment">
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41 <environment_variable action="set_to" name="MIRA4_9">$INSTALL_DIR/</environment_variable>
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42 </action>
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43 </actions_group>
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44 </install>
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45 <readme>
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46 Downloads MIRA v4.9.5 from Sourceforge, requesting Bastien's precompiled binaries
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47 for 64 bit (x86_64) Linux. Currently the Mac OS X binaries are not available.
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48
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49 Other platforms where compilation from source would be required (e.g. 32 bit Linux)
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50 are not supported by this automated installation script.
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52 http://chevreux.org/projects_mira.html
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53 http://sourceforge.net/projects/mira-assembler/
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54
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b758c4e48fa5 Switch to a unique environment variable
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55 The environment variable ``$MIRA4_9`` will point to the folder containing the
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56 binaries (with a trailing slash), and this is also pre-pended to the``$PATH``
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57 variable.
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58 </readme>
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59 </package>
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60 </tool_dependency>