Mercurial > repos > peterjc > package_mira_3_4_1_1

comparison tool_dependencies.xml @ 6:aff5e2528b9d draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/packages/package_mira_3_4_1_1 commit fd979d17340cde155de176604744831d9597c6b6
author peterjc
date Thu, 18 May 2017 13:37:08 -0400
parents a50610140295
children
comparison
equal deleted inserted replaced
5:64920d90983b 6:aff5e2528b9d
1 <?xml version="1.0"?>
2 <tool_dependency>
3 <package name="MIRA" version="3.4.1.1">
4 <install version="1.0">
5 <actions_group>
6 <!-- Download the binaries for MIRA compatible with 64-bit Linux. -->
7 <actions architecture="x86_64" os="linux">
8 <!-- http://downloads.sourceforge.net/project/mira-assembler/MIRA/Older%20releases/V3.4.0/mira_3.4.1.1_prod_linux-gnu_x86_64_static.tar.bz2 -->
9 <action type="download_by_url" sha256sum="8843c3efc72f0ca8c7e681f9d81748604127b1d9c01d0234a5e8b3a55b798d5c">https://depot.galaxyproject.org/software/mira/mira_3.4.1.1_linux_x64.tar.bz2</action>
10 <action type="move_directory_files">
11 <source_directory>bin</source_directory>
12 <destination_directory>$INSTALL_DIR</destination_directory>
13 </action>
14 </actions>
15 <!-- This actions tag is only processed if none of the above tags resulted in a successful installation. -->
16 <actions>
17 <action type="shell_command">echo "ERROR: Automated installation on your operating system and CPU architecture combination is not yet supported."</action>
18 <action type="shell_command">echo "Your machine details (the output from 'uname' and 'arch'):"</action>
19 <action type="shell_command">uname</action>
20 <action type="shell_command">arch</action>
21 <action type="shell_command">echo "If pre-compiled MIRA binaries are now available for this, please report this"</action>
22 <action type="shell_command">echo "via https://github.com/peterjc/galaxy_mira/issues - thank you!"</action>
23 <action type="shell_command">false</action>
24 <!-- The 'false' command will return an error, so Galaxy should treat this as a failed install -->
25 </actions>
26 <!-- The $PATH environment variable is only set if one of the above <actions> tags resulted in a successful installation. -->
27 <action type="set_environment">
28 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR</environment_variable>
29 </action>
30 <action type="set_environment">
31 <environment_variable action="set_to" name="MIRA3">$INSTALL_DIR</environment_variable>
32 </action>
33 </actions_group>
34 </install>
35 <readme>
36 Downloads MIRA v3.4.1.1 from Sourceforge, requesting Bastien's precompiled binaries
37 for 64bit Linux (x86_64). He also has binaries for 32bit Linux (686 only), which we
38 could use once the Galaxy installation framework allow that kind of flexibility.
39
40 http://chevreux.org/projects_mira.html
41 http://sourceforge.net/projects/mira-assembler/
42
43 The environment variable ``$MIRA3`` will point to the folder containing the binaries,
44 which is also pre-pended to the ``$PATH`` variable.
45 </readme>
46 </package>
47 </tool_dependency>
48