Mercurial > repos > peterjc > package_mira_3_4_1_1

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planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/packages/package_mira_3_4_1_1 commit fd979d17340cde155de176604744831d9597c6b6
author peterjc
date Thu, 18 May 2017 13:37:08 -0400
parents a50610140295
children
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="MIRA" version="3.4.1.1">
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4 <install version="1.0">
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5 <actions_group>
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6 <!-- Download the binaries for MIRA compatible with 64-bit Linux. -->
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7 <actions architecture="x86_64" os="linux">
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8 <!-- http://downloads.sourceforge.net/project/mira-assembler/MIRA/Older%20releases/V3.4.0/mira_3.4.1.1_prod_linux-gnu_x86_64_static.tar.bz2 -->
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9 <action type="download_by_url" sha256sum="8843c3efc72f0ca8c7e681f9d81748604127b1d9c01d0234a5e8b3a55b798d5c">https://depot.galaxyproject.org/software/mira/mira_3.4.1.1_linux_x64.tar.bz2</action>
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10 <action type="move_directory_files">
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11 <source_directory>bin</source_directory>
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12 <destination_directory>$INSTALL_DIR</destination_directory>
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13 </action>
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14 </actions>
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15 <!-- This actions tag is only processed if none of the above tags resulted in a successful installation. -->
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16 <actions>
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17 <action type="shell_command">echo "ERROR: Automated installation on your operating system and CPU architecture combination is not yet supported."</action>
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18 <action type="shell_command">echo "Your machine details (the output from 'uname' and 'arch'):"</action>
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19 <action type="shell_command">uname</action>
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20 <action type="shell_command">arch</action>
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21 <action type="shell_command">echo "If pre-compiled MIRA binaries are now available for this, please report this"</action>
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22 <action type="shell_command">echo "via https://github.com/peterjc/galaxy_mira/issues - thank you!"</action>
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23 <action type="shell_command">false</action>
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24 <!-- The 'false' command will return an error, so Galaxy should treat this as a failed install -->
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25 </actions>
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26 <!-- The $PATH environment variable is only set if one of the above <actions> tags resulted in a successful installation. -->
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27 <action type="set_environment">
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28 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR</environment_variable>
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29 </action>
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30 <action type="set_environment">
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31 <environment_variable action="set_to" name="MIRA3">$INSTALL_DIR</environment_variable>
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32 </action>
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33 </actions_group>
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34 </install>
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35 <readme>
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36 Downloads MIRA v3.4.1.1 from Sourceforge, requesting Bastien's precompiled binaries
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37 for 64bit Linux (x86_64). He also has binaries for 32bit Linux (686 only), which we
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38 could use once the Galaxy installation framework allow that kind of flexibility.
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39
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40 http://chevreux.org/projects_mira.html
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41 http://sourceforge.net/projects/mira-assembler/
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42
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43 The environment variable ``$MIRA3`` will point to the folder containing the binaries,
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44 which is also pre-pended to the ``$PATH`` variable.
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45 </readme>
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46 </package>
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47 </tool_dependency>
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48