Mercurial > repos > peterjc > ncbi_blast_plus
annotate test-data/tblastn_four_human_vs_rhodopsin.html @ 47:d0de6862cda1 draft
Uploaded v0.1.01, embed citation info, GI and SeqID filters.
| author | peterjc |
|---|---|
| date | Fri, 31 Oct 2014 11:43:23 -0400 |
| parents | 2f7fac29bb3c |
| children | b19b6addd05c |
| rev | line source |
|---|---|
| 0 | 1 <HTML> |
| 2 <TITLE>BLAST Search Results</TITLE> | |
| 3 <BODY BGCOLOR="#FFFFFF" LINK="#0000FF" VLINK="#660099" ALINK="#660099"> | |
| 4 <PRE> | |
| 5 | |
|
38
2f7fac29bb3c
Uploaded v0.1.00 preview 1, updated to wrap BLAST+ 2.2.29
peterjc
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changeset
|
6 <b>TBLASTN 2.2.29+</b> |
| 0 | 7 |
| 8 | |
| 9 <b>Query=</b> sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44 | |
| 10 OS=Homo sapiens GN=ERP44 PE=1 SV=1 | |
| 11 | |
| 12 Length=406 | |
| 13 | |
| 14 <b>Subject=</b> gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA | |
| 15 | |
| 16 Length=1047 | |
| 17 | |
| 18 | |
| 19 ***** No hits found ***** | |
| 20 | |
| 21 | |
| 22 | |
|
30
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
23 Lambda K H a alpha |
|
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
24 0.347 0.182 0.684 0.522 1.92 |
| 0 | 25 |
| 26 Gapped | |
|
30
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
27 Lambda K H a alpha sigma |
|
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
28 0.299 0.0710 0.270 1.10 13.8 14.5 |
| 0 | 29 |
| 30 Effective search space used: 127710 | |
| 31 | |
| 32 | |
| 33 <b>Query=</b> sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44 | |
| 34 OS=Homo sapiens GN=ERP44 PE=1 SV=1 | |
| 35 | |
| 36 Length=406 | |
| 37 | |
| 38 <b>Subject=</b> gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete | |
| 39 cds | |
| 40 | |
| 41 Length=1574 | |
| 42 | |
| 43 | |
| 44 ***** No hits found ***** | |
| 45 | |
| 46 | |
| 47 | |
|
30
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
48 Lambda K H a alpha |
|
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
49 0.347 0.182 0.684 0.522 1.92 |
| 0 | 50 |
| 51 Gapped | |
|
30
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
52 Lambda K H a alpha sigma |
|
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
53 0.299 0.0710 0.270 1.10 13.8 14.5 |
| 0 | 54 |
| 55 Effective search space used: 127710 | |
| 56 | |
| 57 | |
| 58 <b>Query=</b> sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44 | |
| 59 OS=Homo sapiens GN=ERP44 PE=1 SV=1 | |
| 60 | |
| 61 Length=406 | |
| 62 | |
| 63 <b>Subject=</b> gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434 | |
| 64 rhodopsin (RHO) gene, exons 1 through 5 and partial cds | |
| 65 | |
| 66 Length=4301 | |
| 67 | |
| 68 | |
| 69 ***** No hits found ***** | |
| 70 | |
| 71 | |
| 72 | |
|
30
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
73 Lambda K H a alpha |
|
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
74 0.347 0.182 0.684 0.522 1.92 |
| 0 | 75 |
| 76 Gapped | |
|
30
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
77 Lambda K H a alpha sigma |
|
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
78 0.299 0.0710 0.270 1.10 13.8 14.5 |
| 0 | 79 |
| 80 Effective search space used: 127710 | |
| 81 | |
| 82 | |
| 83 <b>Query=</b> sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44 | |
| 84 OS=Homo sapiens GN=ERP44 PE=1 SV=1 | |
| 85 | |
| 86 Length=406 | |
| 87 | |
| 88 <b>Subject=</b> gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin | |
| 89 (RHO) mRNA, partial cds | |
| 90 | |
| 91 Length=983 | |
| 92 | |
| 93 | |
| 94 ***** No hits found ***** | |
| 95 | |
| 96 | |
| 97 | |
|
30
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
98 Lambda K H a alpha |
|
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
99 0.347 0.182 0.684 0.522 1.92 |
| 0 | 100 |
| 101 Gapped | |
|
30
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
102 Lambda K H a alpha sigma |
|
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
103 0.299 0.0710 0.270 1.10 13.8 14.5 |
| 0 | 104 |
| 105 Effective search space used: 127710 | |
| 106 | |
| 107 | |
| 108 <b>Query=</b> sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44 | |
| 109 OS=Homo sapiens GN=ERP44 PE=1 SV=1 | |
| 110 | |
| 111 Length=406 | |
| 112 | |
| 113 <b>Subject=</b> gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for | |
| 114 rhodopsin, complete cds | |
| 115 | |
| 116 Length=1047 | |
| 117 | |
| 118 | |
| 119 ***** No hits found ***** | |
| 120 | |
| 121 | |
| 122 | |
|
30
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
123 Lambda K H a alpha |
|
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
124 0.347 0.182 0.684 0.522 1.92 |
| 0 | 125 |
| 126 Gapped | |
|
30
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
127 Lambda K H a alpha sigma |
|
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
128 0.299 0.0710 0.270 1.10 13.8 14.5 |
| 0 | 129 |
| 130 Effective search space used: 127710 | |
| 131 | |
| 132 | |
| 133 <b>Query=</b> sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44 | |
| 134 OS=Homo sapiens GN=ERP44 PE=1 SV=1 | |
| 135 | |
| 136 Length=406 | |
| 137 | |
| 138 <b>Subject=</b> gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh | |
| 139 water form rod opsin, complete cds | |
| 140 | |
| 141 Length=1344 | |
| 142 | |
| 143 | |
| 144 ***** No hits found ***** | |
| 145 | |
| 146 | |
| 147 | |
|
30
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
148 Lambda K H a alpha |
|
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
149 0.347 0.182 0.684 0.522 1.92 |
| 0 | 150 |
| 151 Gapped | |
|
30
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
152 Lambda K H a alpha sigma |
|
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
153 0.299 0.0710 0.270 1.10 13.8 14.5 |
| 0 | 154 |
| 155 Effective search space used: 127710 | |
| 156 | |
| 157 | |
| 158 <b>Query=</b> sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens | |
| 159 GN=BMP2K PE=1 SV=2 | |
| 160 | |
| 161 Length=1161 | |
| 162 | |
| 163 <b>Subject=</b> gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA | |
| 164 | |
| 165 Length=1047 | |
| 166 | |
| 167 | |
| 168 ***** No hits found ***** | |
| 169 | |
| 170 | |
| 171 | |
|
30
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
172 Lambda K H a alpha |
|
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
173 0.334 0.170 0.615 0.522 1.92 |
| 0 | 174 |
| 175 Gapped | |
|
30
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
176 Lambda K H a alpha sigma |
|
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
177 0.299 0.0710 0.270 1.10 13.8 14.5 |
| 0 | 178 |
| 179 Effective search space used: 370988 | |
| 180 | |
| 181 | |
| 182 <b>Query=</b> sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens | |
| 183 GN=BMP2K PE=1 SV=2 | |
| 184 | |
| 185 Length=1161 | |
| 186 | |
| 187 <b>Subject=</b> gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete | |
| 188 cds | |
| 189 | |
| 190 Length=1574 | |
| 191 | |
| 192 | |
| 193 ***** No hits found ***** | |
| 194 | |
| 195 | |
| 196 | |
|
30
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
197 Lambda K H a alpha |
|
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
198 0.334 0.170 0.615 0.522 1.92 |
| 0 | 199 |
| 200 Gapped | |
|
30
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
201 Lambda K H a alpha sigma |
|
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
202 0.299 0.0710 0.270 1.10 13.8 14.5 |
| 0 | 203 |
| 204 Effective search space used: 370988 | |
| 205 | |
| 206 | |
| 207 <b>Query=</b> sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens | |
| 208 GN=BMP2K PE=1 SV=2 | |
| 209 | |
| 210 Length=1161 | |
| 211 | |
| 212 <b>Subject=</b> gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434 | |
| 213 rhodopsin (RHO) gene, exons 1 through 5 and partial cds | |
| 214 | |
| 215 Length=4301 | |
| 216 | |
| 217 | |
| 218 ***** No hits found ***** | |
| 219 | |
| 220 | |
| 221 | |
|
30
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
222 Lambda K H a alpha |
|
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
223 0.334 0.170 0.615 0.522 1.92 |
| 0 | 224 |
| 225 Gapped | |
|
30
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
226 Lambda K H a alpha sigma |
|
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
227 0.299 0.0710 0.270 1.10 13.8 14.5 |
| 0 | 228 |
| 229 Effective search space used: 370988 | |
| 230 | |
| 231 | |
| 232 <b>Query=</b> sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens | |
| 233 GN=BMP2K PE=1 SV=2 | |
| 234 | |
| 235 Length=1161 | |
| 236 | |
| 237 <b>Subject=</b> gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin | |
| 238 (RHO) mRNA, partial cds | |
| 239 | |
| 240 Length=983 | |
| 241 | |
| 242 | |
| 243 ***** No hits found ***** | |
| 244 | |
| 245 | |
| 246 | |
|
30
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
247 Lambda K H a alpha |
|
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
248 0.334 0.170 0.615 0.522 1.92 |
| 0 | 249 |
| 250 Gapped | |
|
30
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
251 Lambda K H a alpha sigma |
|
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
252 0.299 0.0710 0.270 1.10 13.8 14.5 |
| 0 | 253 |
| 254 Effective search space used: 370988 | |
| 255 | |
| 256 | |
| 257 <b>Query=</b> sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens | |
| 258 GN=BMP2K PE=1 SV=2 | |
| 259 | |
| 260 Length=1161 | |
| 261 | |
| 262 <b>Subject=</b> gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for | |
| 263 rhodopsin, complete cds | |
| 264 | |
| 265 Length=1047 | |
| 266 | |
| 267 | |
| 268 ***** No hits found ***** | |
| 269 | |
| 270 | |
| 271 | |
|
30
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
272 Lambda K H a alpha |
|
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
273 0.334 0.170 0.615 0.522 1.92 |
| 0 | 274 |
| 275 Gapped | |
|
30
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
276 Lambda K H a alpha sigma |
|
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
277 0.299 0.0710 0.270 1.10 13.8 14.5 |
| 0 | 278 |
| 279 Effective search space used: 370988 | |
| 280 | |
| 281 | |
| 282 <b>Query=</b> sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens | |
| 283 GN=BMP2K PE=1 SV=2 | |
| 284 | |
| 285 Length=1161 | |
| 286 | |
| 287 <b>Subject=</b> gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh | |
| 288 water form rod opsin, complete cds | |
| 289 | |
| 290 Length=1344 | |
| 291 | |
| 292 | |
| 293 ***** No hits found ***** | |
| 294 | |
| 295 | |
| 296 | |
|
30
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
297 Lambda K H a alpha |
|
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
298 0.334 0.170 0.615 0.522 1.92 |
| 0 | 299 |
| 300 Gapped | |
|
30
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
301 Lambda K H a alpha sigma |
|
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
302 0.299 0.0710 0.270 1.10 13.8 14.5 |
| 0 | 303 |
| 304 Effective search space used: 370988 | |
| 305 | |
| 306 | |
| 307 <b>Query=</b> sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1 | |
| 308 SV=4 | |
| 309 | |
| 310 Length=1382 | |
| 311 | |
| 312 <b>Subject=</b> gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA | |
| 313 | |
| 314 Length=1047 | |
| 315 | |
| 316 | |
| 317 ***** No hits found ***** | |
| 318 | |
| 319 | |
| 320 | |
|
30
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
321 Lambda K H a alpha |
|
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
322 0.346 0.180 0.700 0.522 1.92 |
| 0 | 323 |
| 324 Gapped | |
|
30
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
325 Lambda K H a alpha sigma |
|
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
326 0.299 0.0710 0.270 1.10 13.8 14.5 |
| 0 | 327 |
| 328 Effective search space used: 441350 | |
| 329 | |
| 330 | |
| 331 <b>Query=</b> sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1 | |
| 332 SV=4 | |
| 333 | |
| 334 Length=1382 | |
| 335 | |
| 336 <b>Subject=</b> gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete | |
| 337 cds | |
| 338 | |
| 339 Length=1574 | |
| 340 | |
| 341 | |
| 342 ***** No hits found ***** | |
| 343 | |
| 344 | |
| 345 | |
|
30
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
346 Lambda K H a alpha |
|
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
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diff
changeset
|
347 0.346 0.180 0.700 0.522 1.92 |
| 0 | 348 |
| 349 Gapped | |
|
30
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
350 Lambda K H a alpha sigma |
|
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
351 0.299 0.0710 0.270 1.10 13.8 14.5 |
| 0 | 352 |
| 353 Effective search space used: 441350 | |
| 354 | |
| 355 | |
| 356 <b>Query=</b> sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1 | |
| 357 SV=4 | |
| 358 | |
| 359 Length=1382 | |
| 360 | |
| 361 <b>Subject=</b> gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434 | |
| 362 rhodopsin (RHO) gene, exons 1 through 5 and partial cds | |
| 363 | |
| 364 Length=4301 | |
| 365 | |
| 366 | |
| 367 ***** No hits found ***** | |
| 368 | |
| 369 | |
| 370 | |
|
30
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
371 Lambda K H a alpha |
|
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
372 0.346 0.180 0.700 0.522 1.92 |
| 0 | 373 |
| 374 Gapped | |
|
30
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
375 Lambda K H a alpha sigma |
|
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
376 0.299 0.0710 0.270 1.10 13.8 14.5 |
| 0 | 377 |
| 378 Effective search space used: 441350 | |
| 379 | |
| 380 | |
| 381 <b>Query=</b> sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1 | |
| 382 SV=4 | |
| 383 | |
| 384 Length=1382 | |
| 385 | |
| 386 <b>Subject=</b> gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin | |
| 387 (RHO) mRNA, partial cds | |
| 388 | |
| 389 Length=983 | |
| 390 | |
| 391 | |
| 392 ***** No hits found ***** | |
| 393 | |
| 394 | |
| 395 | |
|
30
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
396 Lambda K H a alpha |
|
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
397 0.346 0.180 0.700 0.522 1.92 |
| 0 | 398 |
| 399 Gapped | |
|
30
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
400 Lambda K H a alpha sigma |
|
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
401 0.299 0.0710 0.270 1.10 13.8 14.5 |
| 0 | 402 |
| 403 Effective search space used: 441350 | |
| 404 | |
| 405 | |
| 406 <b>Query=</b> sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1 | |
| 407 SV=4 | |
| 408 | |
| 409 Length=1382 | |
| 410 | |
| 411 <b>Subject=</b> gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for | |
| 412 rhodopsin, complete cds | |
| 413 | |
| 414 Length=1047 | |
| 415 | |
| 416 | |
| 417 ***** No hits found ***** | |
| 418 | |
| 419 | |
| 420 | |
|
30
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
421 Lambda K H a alpha |
|
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
422 0.346 0.180 0.700 0.522 1.92 |
| 0 | 423 |
| 424 Gapped | |
|
30
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
425 Lambda K H a alpha sigma |
|
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
426 0.299 0.0710 0.270 1.10 13.8 14.5 |
| 0 | 427 |
| 428 Effective search space used: 441350 | |
| 429 | |
| 430 | |
| 431 <b>Query=</b> sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1 | |
| 432 SV=4 | |
| 433 | |
| 434 Length=1382 | |
| 435 | |
| 436 <b>Subject=</b> gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh | |
| 437 water form rod opsin, complete cds | |
| 438 | |
| 439 Length=1344 | |
| 440 | |
| 441 | |
| 442 ***** No hits found ***** | |
| 443 | |
| 444 | |
| 445 | |
|
30
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
446 Lambda K H a alpha |
|
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
447 0.346 0.180 0.700 0.522 1.92 |
| 0 | 448 |
| 449 Gapped | |
|
30
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
450 Lambda K H a alpha sigma |
|
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
451 0.299 0.0710 0.270 1.10 13.8 14.5 |
| 0 | 452 |
| 453 Effective search space used: 441350 | |
| 454 | |
| 455 | |
| 456 <b>Query=</b> sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1 | |
| 457 | |
| 458 Length=348 | |
| 459 | |
| 460 <b>Subject=</b> gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA | |
| 461 | |
| 462 Length=1047 | |
| 463 | |
|
38
2f7fac29bb3c
Uploaded v0.1.00 preview 1, updated to wrap BLAST+ 2.2.29
peterjc
parents:
33
diff
changeset
|
464 |
|
2f7fac29bb3c
Uploaded v0.1.00 preview 1, updated to wrap BLAST+ 2.2.29
peterjc
parents:
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diff
changeset
|
465 Score = 732 bits (1689), Expect = 0.0, Method: Compositional matrix adjust. |
| 0 | 466 Identities = 336/348 (97%), Positives = 343/348 (99%), Gaps = 0/348 (0%) |
| 467 Frame = +1 | |
| 468 | |
| 469 Query 1 MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLY 60 | |
| 470 MNGTEGPNFYVPFSN TGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLY | |
| 471 Sbjct 1 MNGTEGPNFYVPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLY 180 | |
| 472 | |
| 473 Query 61 VTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLG 120 | |
| 474 VTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLG | |
| 475 Sbjct 181 VTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLG 360 | |
| 476 | |
| 477 Query 121 GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIP 180 | |
| 478 GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPL GWSRYIP | |
| 479 Sbjct 361 GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIP 540 | |
| 480 | |
| 481 Query 181 EGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQES 240 | |
| 482 EG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKEAAAQQQES | |
| 483 Sbjct 541 EGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQES 720 | |
| 484 | |
| 485 Query 241 ATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAI 300 | |
| 486 ATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMT+PAFFAKS++I | |
| 487 Sbjct 721 ATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTLPAFFAKSSSI 900 | |
| 488 | |
| 489 Query 301 YNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA 348 | |
| 490 YNPVIYIMMNKQFRNCMLTT+CCGKNPLGDDEAS T SKTETSQVAPA | |
| 491 Sbjct 901 YNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTGSKTETSQVAPA 1044 | |
| 492 | |
| 493 | |
| 494 | |
|
30
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
495 Lambda K H a alpha |
|
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
496 0.351 0.182 0.707 0.522 1.92 |
| 0 | 497 |
| 498 Gapped | |
|
30
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
499 Lambda K H a alpha sigma |
|
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
500 0.299 0.0710 0.270 1.10 13.8 14.5 |
| 0 | 501 |
| 502 Effective search space used: 109230 | |
| 503 | |
| 504 | |
| 505 <b>Query=</b> sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1 | |
| 506 | |
| 507 Length=348 | |
| 508 | |
| 509 <b>Subject=</b> gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete | |
| 510 cds | |
| 511 | |
| 512 Length=1574 | |
| 513 | |
|
38
2f7fac29bb3c
Uploaded v0.1.00 preview 1, updated to wrap BLAST+ 2.2.29
peterjc
parents:
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diff
changeset
|
514 |
|
2f7fac29bb3c
Uploaded v0.1.00 preview 1, updated to wrap BLAST+ 2.2.29
peterjc
parents:
33
diff
changeset
|
515 Score = 646 bits (1489), Expect = 0.0, Method: Compositional matrix adjust. |
| 0 | 516 Identities = 290/342 (85%), Positives = 320/342 (94%), Gaps = 1/342 (0%) |
| 517 Frame = +3 | |
| 518 | |
| 519 Query 1 MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLY 60 | |
| 520 MNGTEGPNFY+P SN TGVVRSPFEYPQYYLAEPWQ+S+L AYMFLLI+LGFPINF+TLY | |
| 521 Sbjct 42 MNGTEGPNFYIPMSNKTGVVRSPFEYPQYYLAEPWQYSILCAYMFLLILLGFPINFMTLY 221 | |
| 522 | |
| 523 Query 61 VTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLG 120 | |
| 524 VT+QHKKLRTPLNYILLNLA A+ FMVL GFT T+Y+S+ GYF+ G TGC +EGFFATLG | |
| 525 Sbjct 222 VTIQHKKLRTPLNYILLNLAFANHFMVLCGFTVTMYSSMNGYFILGATGCYVEGFFATLG 401 | |
| 526 | |
| 527 Query 121 GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIP 180 | |
| 528 GEIALWSLVVLAIERYVVVCKPMSNFRF ENHA+MGVAFTW+MAL+CA PPL GWSRYIP | |
| 529 Sbjct 402 GEIALWSLVVLAIERYVVVCKPMSNFRFSENHAVMGVAFTWIMALSCAVPPLLGWSRYIP 581 | |
| 530 | |
| 531 Query 181 EGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQES 240 | |
| 532 EG+QCSCG+DYYTLKPEVNNESFVIYMFVVHFTIP+IIIFFCYG+LV TVKEAAAQQQES | |
| 533 Sbjct 582 EGMQCSCGVDYYTLKPEVNNESFVIYMFVVHFTIPLIIIFFCYGRLVCTVKEAAAQQQES 761 | |
| 534 | |
| 535 Query 241 ATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAI 300 | |
| 536 ATTQKAEKEVTRMVIIMV+ FLICWVPYASVAF+IF+ QGS FGPIFMT+PAFFAKS++I | |
| 537 Sbjct 762 ATTQKAEKEVTRMVIIMVVFFLICWVPYASVAFFIFSNQGSEFGPIFMTVPAFFAKSSSI 941 | |
| 538 | |
| 539 Query 301 YNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEA-SATVSKTE 341 | |
| 540 YNPVIYIM+NKQFRNCM+TT+CCGKNP G+D+A SA SKTE | |
| 541 Sbjct 942 YNPVIYIMLNKQFRNCMITTLCCGKNPFGEDDASSAATSKTE 1067 | |
| 542 | |
| 543 | |
| 544 | |
|
30
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
545 Lambda K H a alpha |
|
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
546 0.351 0.182 0.707 0.522 1.92 |
| 0 | 547 |
| 548 Gapped | |
|
30
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
549 Lambda K H a alpha sigma |
|
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
550 0.299 0.0710 0.270 1.10 13.8 14.5 |
| 0 | 551 |
| 552 Effective search space used: 109230 | |
| 553 | |
| 554 | |
| 555 <b>Query=</b> sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1 | |
| 556 | |
| 557 Length=348 | |
| 558 | |
| 559 <b>Subject=</b> gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434 | |
| 560 rhodopsin (RHO) gene, exons 1 through 5 and partial cds | |
| 561 | |
| 562 Length=4301 | |
| 563 | |
|
38
2f7fac29bb3c
Uploaded v0.1.00 preview 1, updated to wrap BLAST+ 2.2.29
peterjc
parents:
33
diff
changeset
|
564 |
|
2f7fac29bb3c
Uploaded v0.1.00 preview 1, updated to wrap BLAST+ 2.2.29
peterjc
parents:
33
diff
changeset
|
565 Score = 151 bits (342), Expect(2) = 1e-72, Method: Compositional matrix adjust. |
| 3 | 566 Identities = 69/74 (93%), Positives = 73/74 (99%), Gaps = 0/74 (0%) |
| 0 | 567 Frame = +3 |
| 568 | |
| 569 Query 239 ESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSA 298 | |
| 570 ESATTQKAEKEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGSNFGPIFMT+PAFFAKS+ | |
| 571 Sbjct 3147 ESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSNFGPIFMTLPAFFAKSS 3326 | |
| 572 | |
| 573 Query 299 AIYNPVIYIMMNKQ 312 | |
| 574 +IYNPVIYIMMNKQ | |
| 575 Sbjct 3327 SIYNPVIYIMMNKQ 3368 | |
| 576 | |
| 577 | |
|
38
2f7fac29bb3c
Uploaded v0.1.00 preview 1, updated to wrap BLAST+ 2.2.29
peterjc
parents:
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diff
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|
578 Score = 126 bits (284), Expect(2) = 1e-72, Method: Compositional matrix adjust. |
| 0 | 579 Identities = 54/59 (92%), Positives = 57/59 (97%), Gaps = 0/59 (0%) |
| 580 Frame = +2 | |
| 581 | |
| 582 Query 177 RYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAA 235 | |
| 583 RYIPEG+QCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKE + | |
| 584 Sbjct 2855 RYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEVRS 3031 | |
| 585 | |
| 586 | |
|
38
2f7fac29bb3c
Uploaded v0.1.00 preview 1, updated to wrap BLAST+ 2.2.29
peterjc
parents:
33
diff
changeset
|
587 Score = 229 bits (523), Expect = 9e-67, Method: Compositional matrix adjust. |
| 3 | 588 Identities = 107/111 (96%), Positives = 109/111 (98%), Gaps = 0/111 (0%) |
| 0 | 589 Frame = +1 |
| 590 | |
| 591 Query 11 VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT 70 | |
| 592 VPFSN TGVVRSPFE+PQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT | |
| 593 Sbjct 1 VPFSNKTGVVRSPFEHPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT 180 | |
| 594 | |
| 595 Query 71 PLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGG 121 | |
| 596 PLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLGG | |
| 597 Sbjct 181 PLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGG 333 | |
| 598 | |
| 599 | |
|
38
2f7fac29bb3c
Uploaded v0.1.00 preview 1, updated to wrap BLAST+ 2.2.29
peterjc
parents:
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diff
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|
600 Score = 122 bits (276), Expect = 1e-32, Method: Compositional matrix adjust. |
| 3 | 601 Identities = 55/59 (93%), Positives = 56/59 (95%), Gaps = 0/59 (0%) |
| 0 | 602 Frame = +3 |
| 603 | |
| 604 Query 119 LGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSR 177 | |
| 605 L GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMG+A TWVMALACAAPPL GWSR | |
| 606 Sbjct 1404 LAGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLALTWVMALACAAPPLVGWSR 1580 | |
| 607 | |
| 608 | |
| 3 | 609 Score = 57.7 bits (125), Expect = 2e-12, Method: Compositional matrix adjust. |
| 610 Identities = 23/26 (88%), Positives = 24/26 (92%), Gaps = 0/26 (0%) | |
| 0 | 611 Frame = +1 |
| 612 | |
| 613 Query 312 QFRNCMLTTICCGKNPLGDDEASATV 337 | |
| 614 QFRNCMLTT+CCGKNPLGDDEAS T | |
| 615 Sbjct 4222 QFRNCMLTTLCCGKNPLGDDEASTTA 4299 | |
| 616 | |
| 617 | |
| 618 | |
|
30
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
619 Lambda K H a alpha |
|
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
620 0.351 0.182 0.707 0.522 1.92 |
| 0 | 621 |
| 622 Gapped | |
|
30
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
623 Lambda K H a alpha sigma |
|
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
624 0.299 0.0710 0.270 1.10 13.8 14.5 |
| 0 | 625 |
| 626 Effective search space used: 109230 | |
| 627 | |
| 628 | |
| 629 <b>Query=</b> sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1 | |
| 630 | |
| 631 Length=348 | |
| 632 | |
| 633 <b>Subject=</b> gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin | |
| 634 (RHO) mRNA, partial cds | |
| 635 | |
| 636 Length=983 | |
| 637 | |
|
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638 |
|
2f7fac29bb3c
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|
639 Score = 658 bits (1517), Expect = 0.0, Method: Compositional matrix adjust. |
| 3 | 640 Identities = 310/326 (95%), Positives = 322/326 (99%), Gaps = 0/326 (0%) |
| 0 | 641 Frame = +1 |
| 642 | |
| 643 Query 11 VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT 70 | |
| 644 VPFSN TGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT | |
| 645 Sbjct 1 VPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT 180 | |
| 646 | |
| 647 Query 71 PLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVV 130 | |
| 648 PLNYILLNLAVA+LFMV GGFT+TLYTS+HGYFVFG TGCNLEGFFATLGGEIALWSLVV | |
| 649 Sbjct 181 PLNYILLNLAVANLFMVFGGFTTTLYTSMHGYFVFGATGCNLEGFFATLGGEIALWSLVV 360 | |
| 650 | |
| 651 Query 131 LAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGID 190 | |
| 652 LAIERYVVVCKPMSNFRFGENHAIMG+AFTWVMALACAAPPLAGWSRYIPEG+QCSCGID | |
| 653 Sbjct 361 LAIERYVVVCKPMSNFRFGENHAIMGLAFTWVMALACAAPPLAGWSRYIPEGMQCSCGID 540 | |
| 654 | |
| 655 Query 191 YYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEV 250 | |
| 656 YYTLKPEVNNESFVIYMFVVHFTIPMI+IFFCYGQLVFTVKEAAAQQQESATTQKAEKEV | |
| 657 Sbjct 541 YYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEV 720 | |
| 658 | |
| 659 Query 251 TRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMN 310 | |
| 660 TRMVIIMV+AFLICW+PYASVAFYIFTHQGSNFGP+FMTIPAFFAKS++IYNPVIYIMMN | |
| 661 Sbjct 721 TRMVIIMVVAFLICWLPYASVAFYIFTHQGSNFGPVFMTIPAFFAKSSSIYNPVIYIMMN 900 | |
| 662 | |
| 663 Query 311 KQFRNCMLTTICCGKNPLGDDEASAT 336 | |
| 664 KQFRNCMLTT+CCGKNPLGDDEAS T | |
| 665 Sbjct 901 KQFRNCMLTTLCCGKNPLGDDEASTT 978 | |
| 666 | |
| 667 | |
| 668 | |
|
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peterjc
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669 Lambda K H a alpha |
|
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peterjc
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diff
changeset
|
670 0.351 0.182 0.707 0.522 1.92 |
| 0 | 671 |
| 672 Gapped | |
|
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peterjc
parents:
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|
673 Lambda K H a alpha sigma |
|
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
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|
674 0.299 0.0710 0.270 1.10 13.8 14.5 |
| 0 | 675 |
| 676 Effective search space used: 109230 | |
| 677 | |
| 678 | |
| 679 <b>Query=</b> sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1 | |
| 680 | |
| 681 Length=348 | |
| 682 | |
| 683 <b>Subject=</b> gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for | |
| 684 rhodopsin, complete cds | |
| 685 | |
| 686 Length=1047 | |
| 687 | |
|
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688 |
|
2f7fac29bb3c
Uploaded v0.1.00 preview 1, updated to wrap BLAST+ 2.2.29
peterjc
parents:
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|
689 Score = 711 bits (1640), Expect = 0.0, Method: Compositional matrix adjust. |
| 3 | 690 Identities = 325/348 (93%), Positives = 337/348 (97%), Gaps = 0/348 (0%) |
| 0 | 691 Frame = +1 |
| 692 | |
| 693 Query 1 MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLY 60 | |
| 694 MNGTEGPNFYVPFSN TGVVRSPFE PQYYLAEPWQFSMLAAYMFLLI+LGFPINFLTLY | |
| 695 Sbjct 1 MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLY 180 | |
| 696 | |
| 697 Query 61 VTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLG 120 | |
| 698 VTVQHKKLRTPLNYILLNLAVADLFMV GGFT+TLYTSLHGYFVFGPTGCNLEGFFATLG | |
| 699 Sbjct 181 VTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLG 360 | |
| 700 | |
| 701 Query 121 GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIP 180 | |
| 702 GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPL GWSRYIP | |
| 703 Sbjct 361 GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIP 540 | |
| 704 | |
| 705 Query 181 EGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQES 240 | |
| 706 EG+QCSCGIDYYT E NNESFVIYMFVVHF IP+I+IFFCYGQLVFTVKEAAAQQQES | |
| 707 Sbjct 541 EGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQES 720 | |
| 708 | |
| 709 Query 241 ATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAI 300 | |
| 710 ATTQKAEKEVTRMVIIMVIAFLICW+PYA VAFYIFTHQGS+FGPIFMTIPAFFAK++A+ | |
| 711 Sbjct 721 ATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAV 900 | |
| 712 | |
| 713 Query 301 YNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA 348 | |
| 714 YNPVIYIMMNKQFRNCM+TT+CCGKNPLGDDEAS TVSKTETSQVAPA | |
| 715 Sbjct 901 YNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA 1044 | |
| 716 | |
| 717 | |
| 718 | |
|
30
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peterjc
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719 Lambda K H a alpha |
|
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
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diff
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|
720 0.351 0.182 0.707 0.522 1.92 |
| 0 | 721 |
| 722 Gapped | |
|
30
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723 Lambda K H a alpha sigma |
|
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
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|
724 0.299 0.0710 0.270 1.10 13.8 14.5 |
| 0 | 725 |
| 726 Effective search space used: 109230 | |
| 727 | |
| 728 | |
| 729 <b>Query=</b> sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1 | |
| 730 | |
| 731 Length=348 | |
| 732 | |
| 733 <b>Subject=</b> gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh | |
| 734 water form rod opsin, complete cds | |
| 735 | |
| 736 Length=1344 | |
| 737 | |
|
38
2f7fac29bb3c
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738 |
|
2f7fac29bb3c
Uploaded v0.1.00 preview 1, updated to wrap BLAST+ 2.2.29
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parents:
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739 Score = 626 bits (1444), Expect = 0.0, Method: Compositional matrix adjust. |
| 3 | 740 Identities = 281/342 (82%), Positives = 311/342 (91%), Gaps = 1/342 (0%) |
| 0 | 741 Frame = +2 |
| 742 | |
| 743 Query 1 MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLY 60 | |
| 744 MNGTEGPNFY+P SNATGVVRSPFEYPQYYLAEPW FS L+AYMF LI+ GFPINFLTLY | |
| 745 Sbjct 23 MNGTEGPNFYIPMSNATGVVRSPFEYPQYYLAEPWAFSALSAYMFFLIIAGFPINFLTLY 202 | |
| 746 | |
| 747 Query 61 VTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLG 120 | |
| 748 VT++HKKLRTPLNYILLNLAVADLFMV GGFT+T+YTS+HGYFVFGPTGCN+EGFFATLG | |
| 749 Sbjct 203 VTIEHKKLRTPLNYILLNLAVADLFMVFGGFTTTMYTSMHGYFVFGPTGCNIEGFFATLG 382 | |
| 750 | |
| 751 Query 121 GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIP 180 | |
| 752 GEIALW LVVLAIER++VVCKP++NFRFGE HAIMGV TW MALACA PPL GWSRYIP | |
| 753 Sbjct 383 GEIALWCLVVLAIERWMVVCKPVTNFRFGESHAIMGVMVTWTMALACALPPLFGWSRYIP 562 | |
| 754 | |
| 755 Query 181 EGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQES 240 | |
| 756 EGLQCSCGIDYYT P +NNESFVIYMF HF+IP+ +I FCYG+LV TVKEAAAQQQES | |
| 757 Sbjct 563 EGLQCSCGIDYYTRAPGINNESFVIYMFTCHFSIPLAVISFCYGRLVCTVKEAAAQQQES 742 | |
| 758 | |
| 759 Query 241 ATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAI 300 | |
| 760 TTQ+AE+EVTRMV+IMVI+FL+CWVPYASVA YIFTHQGS FGPIFMTIP+FFAKS+A+ | |
| 761 Sbjct 743 ETTQRAEREVTRMVVIMVISFLVCWVPYASVAWYIFTHQGSTFGPIFMTIPSFFAKSSAL 922 | |
| 762 | |
| 763 Query 301 YNPVIYIMMNKQFRNCMLTTICCGKNPL-GDDEASATVSKTE 341 | |
| 764 YNP+IYI MNKQFR CM+TT+CCGKNP +D ASAT SKTE | |
| 765 Sbjct 923 YNPMIYICMNKQFRHCMITTLCCGKNPFEEEDGASATSSKTE 1048 | |
| 766 | |
| 767 | |
| 768 | |
|
30
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
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769 Lambda K H a alpha |
|
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
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|
770 0.351 0.182 0.707 0.522 1.92 |
| 0 | 771 |
| 772 Gapped | |
|
30
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peterjc
parents:
3
diff
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773 Lambda K H a alpha sigma |
|
5ec998a3530c
Uploaded v0.0.21, includes support for masking, uses macros internally, and now targets BLAST+ 2.2.27 rather than BLAST+ 2.2.26
peterjc
parents:
3
diff
changeset
|
774 0.299 0.0710 0.270 1.10 13.8 14.5 |
| 0 | 775 |
| 776 Effective search space used: 109230 | |
| 777 | |
| 778 | |
| 779 | |
| 780 | |
| 781 Matrix: BLOSUM80 | |
| 782 Gap Penalties: Existence: 10, Extension: 1 | |
| 783 Neighboring words threshold: 14 | |
| 784 Window for multiple hits: 25 | |
| 785 </PRE> | |
| 786 </BODY> | |
| 787 </HTML> |