Mercurial > repos > peterjc > mira4_assembler

annotate tools/mira4/tool_dependencies.xml @ 9:302d13490b23 draft

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Uploaded v0.0.2 preview 1, BAM output
author peterjc
date Thu, 28 Nov 2013 05:07:59 -0500
parents 2ab1d6f6a8ec
children 79759fdec6cb
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="samtools" version="0.1.19">
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4 <repository changeset_revision="54195f1d4b0f" name="package_samtools_0_1_19" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu" />
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5 </package>
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6 <package name="MIRA" version="4.0">
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7 <install version="1.0">
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8 <actions>
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9 <action type="download_by_url">https://downloads.sourceforge.net/project/mira-assembler/MIRA/stable/mira_4.0rc4_linux-gnu_x86_64_static.tar.bz2</action>
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10 <action type="move_directory_files">
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11 <source_directory>bin</source_directory>
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12 <destination_directory>$INSTALL_DIR</destination_directory>
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13 </action>
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14 <action type="set_environment">
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15 <environment_variable action="set_to" name="MIRA4">$INSTALL_DIR</environment_variable>
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16 </action>
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17 </actions>
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18 </install>
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19 <readme>
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20 Downloads MIRA v4.0 from Sourceforge, requesting Bastien's precompiled binaries
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21 for 64bit Linux (x86_64). He also has binaries for Mac OS X, which we could
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22 use once the extensions to allow that are in the stable Galaxy releases.
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24 http://chevreux.org/projects_mira.html
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25 http://sourceforge.net/projects/mira-assembler/
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26 </readme>
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27 </package>
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28 </tool_dependency>