Mercurial > repos > peterjc > blast2go

annotate tool-data/blast2go.loc.sample @ 2:5cb24d07c316 draft

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Uploaded v0.0.4 with explicit dependency on 'blast_datatypes' for 'blastxml' format definition. No functional changes.
author peterjc
date Fri, 22 Feb 2013 09:13:27 -0500
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children d2b527ddb42d
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5cb24d07c316 Uploaded v0.0.4 with explicit dependency on 'blast_datatypes' for 'blastxml' format definition. No functional changes.
peterjc
parents:
diff changeset
1 # This is a three column tab separated file to define the properties
5cb24d07c316 Uploaded v0.0.4 with explicit dependency on 'blast_datatypes' for 'blastxml' format definition. No functional changes.
peterjc
parents:
diff changeset
2 # file (settings) to be offered for Blast2GO for Pipelines (b2g4pipe).
5cb24d07c316 Uploaded v0.0.4 with explicit dependency on 'blast_datatypes' for 'blastxml' format definition. No functional changes.
peterjc
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3 #
5cb24d07c316 Uploaded v0.0.4 with explicit dependency on 'blast_datatypes' for 'blastxml' format definition. No functional changes.
peterjc
parents:
diff changeset
4 # Column 1 - ID, string that Galaxy will save in its database
5cb24d07c316 Uploaded v0.0.4 with explicit dependency on 'blast_datatypes' for 'blastxml' format definition. No functional changes.
peterjc
parents:
diff changeset
5 # Column 2 - Human readable name, Galaxy will show this in the UI
5cb24d07c316 Uploaded v0.0.4 with explicit dependency on 'blast_datatypes' for 'blastxml' format definition. No functional changes.
peterjc
parents:
diff changeset
6 # Column 3 - Filename, Galaxy will use this when calling the tool
5cb24d07c316 Uploaded v0.0.4 with explicit dependency on 'blast_datatypes' for 'blastxml' format definition. No functional changes.
peterjc
parents:
diff changeset
7 #
5cb24d07c316 Uploaded v0.0.4 with explicit dependency on 'blast_datatypes' for 'blastxml' format definition. No functional changes.
peterjc
parents:
diff changeset
8 # Probably the most important setting in the properties file is the
5cb24d07c316 Uploaded v0.0.4 with explicit dependency on 'blast_datatypes' for 'blastxml' format definition. No functional changes.
peterjc
parents:
diff changeset
9 # Blast2GO database to use. Currently b2g4pipe v2.3.5 ships with an
5cb24d07c316 Uploaded v0.0.4 with explicit dependency on 'blast_datatypes' for 'blastxml' format definition. No functional changes.
peterjc
parents:
diff changeset
10 # old configuration so consult http://blast2go.org for the latest
5cb24d07c316 Uploaded v0.0.4 with explicit dependency on 'blast_datatypes' for 'blastxml' format definition. No functional changes.
peterjc
parents:
diff changeset
11 # public database they host in Spain. We also strongly recommend
5cb24d07c316 Uploaded v0.0.4 with explicit dependency on 'blast_datatypes' for 'blastxml' format definition. No functional changes.
peterjc
parents:
diff changeset
12 # configuring a local Blast2GO database.
5cb24d07c316 Uploaded v0.0.4 with explicit dependency on 'blast_datatypes' for 'blastxml' format definition. No functional changes.
peterjc
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13 #
5cb24d07c316 Uploaded v0.0.4 with explicit dependency on 'blast_datatypes' for 'blastxml' format definition. No functional changes.
peterjc
parents:
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14 Local_2011_May Local database (May 2011) /opt/b2g4pipe/Local_2011_May.properties
5cb24d07c316 Uploaded v0.0.4 with explicit dependency on 'blast_datatypes' for 'blastxml' format definition. No functional changes.
peterjc
parents:
diff changeset
15 Spain_2010_May Database in Spain (May 2010) /opt/b2g4pipe/Spain_2010_May.properties
5cb24d07c316 Uploaded v0.0.4 with explicit dependency on 'blast_datatypes' for 'blastxml' format definition. No functional changes.
peterjc
parents:
diff changeset
16 Spain_2011_June Database in Spain (June 2011) /opt/b2g4pipe/Spain_2011_June.properties