Mercurial > repos > p.lucas > taxid_genusexpand_taxid2acc

changeset 13:d80e5d0898a3 draft

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Uploaded updated xml file
author p.lucas
date Thu, 21 Sep 2023 15:20:21 +0000
parents 19e175a84d0e
children cc6f431bf992
files TAXID_genusexpand_taxid2acc.xml
diffstat 1 files changed, 3 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/TAXID_genusexpand_taxid2acc.xml	Thu Sep 21 15:19:55 2023 +0000
+++ b/TAXID_genusexpand_taxid2acc.xml	Thu Sep 21 15:20:21 2023 +0000
@@ -1,4 +1,4 @@
-<tool id="TAXID_genusexpand_taxid2acc" name="Get acc number for complete genome after MEGABLAST_TAB_select_acc_under_taxids" version="1.1">
+<tool id="TAXID_genusexpand_taxid2acc" name="Get acc number for nt_db genome after MEGABLAST_TAB_select_acc_under_taxids" version="1.2">
   <description>
     From a taxid and acc number file of results (output of MEGABLAST_TAB_select_acc_under_taxids.py) 
     provide 1 file:
@@ -8,6 +8,7 @@
     <requirement type="package" version="3.9.16">python</requirement>
     <requirement type="package" version="3.1.2">ete3</requirement>
     <requirement type="package" version="0.3.1">ncbi-genome-download</requirement>
+    <requirement type="package" version="8.4.0">natsort</requirement>
   </requirements>
   <command detect_errors="exit_code"><![CDATA[
     python '$__tool_directory__/TAXID_genusexpand_taxid2acc.py' -i ${input} -o ${output}
@@ -16,7 +17,7 @@
     <param name="input" format="tsv" type="data" label="Select tsv file with list of taxid and accession number." help="tsv output of MEGABLAST_TAB_select_acc_under_taxids.py (One taxid acc nbr per line)"/>
   </inputs> 
   <outputs>
-    <data name="output" format="txt" label="COMPLETE GENOME FROM ${tool.name} on ${on_string}"/>
+    <data name="output" format="txt" label="NT_DB GENOME FROM ${tool.name} on ${on_string}"/>
   </outputs>
   <help>
 From the tsv output file of MEGABLAST_TAB_select_acc_under_taxids.py, provide 1 file: