Mercurial > repos > p.lucas > taxid_genusexpand_taxid2acc

changeset 7:9238e54d6532 draft

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Uploaded 13 03 23 Fix variable bug line 143
author p.lucas
date Mon, 13 Mar 2023 15:09:54 +0000
parents 81acd8138218
children 8c9418230a5a
files TAXID_genusexpand_taxid2acc.py
diffstat 1 files changed, 1 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/TAXID_genusexpand_taxid2acc.py	Mon Mar 13 13:57:09 2023 +0000
+++ b/TAXID_genusexpand_taxid2acc.py	Mon Mar 13 15:09:54 2023 +0000
@@ -146,7 +146,7 @@
     # ncbi_tax_f = "/nfs/data/db/ete3/taxa.sqlite"
     ncbi_tax_f = os.path.expanduser("~/.etetoolkit/taxa.sqlite")
 if args.taxid_acc_in_f is not None:
-    taxid_acc_in_f = os.path.abspath(args.taxid_acc_f)
+    taxid_acc_in_f = os.path.abspath(args.taxid_acc_in_f)
     b_acc_in_f = True    
 elif(not b_test):
     sys.exit("[Error] You must provide taxid_acc_in_f")