Mercurial > repos > p.lucas > taxid_genusexpand_taxid2acc

changeset 9:7e75c71e3c8e draft

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Uploaded 13 03 23 fin def load_taxids fix bug to avoid error with empty line
author p.lucas
date Mon, 13 Mar 2023 16:16:49 +0000
parents 8c9418230a5a
children 5a4ac43fea68
files TAXID_genusexpand_taxid2acc.py
diffstat 1 files changed, 2 insertions(+), 0 deletions(-) [+]
line wrap: on
line diff
--- a/TAXID_genusexpand_taxid2acc.py	Mon Mar 13 15:53:02 2023 +0000
+++ b/TAXID_genusexpand_taxid2acc.py	Mon Mar 13 16:16:49 2023 +0000
@@ -192,6 +192,8 @@
     cmd = "cut -f 1,2 "+taxid_acc_tabular_f+" | sort | uniq "
 
     for line in os.popen(cmd).readlines():
+        if line != "":
+            continue
         k, v = line.rstrip().split()
         taxidlist.append(k)
         accnrlist.append(v)