Mercurial > repos > p.lucas > taxid_genusexpand_taxid2acc

diff TAXID_genusexpand_taxid2acc.py @ 7:9238e54d6532 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded 13 03 23 Fix variable bug line 143
author p.lucas
date Mon, 13 Mar 2023 15:09:54 +0000
parents 81acd8138218
children 8c9418230a5a
line wrap: on
line diff
--- a/TAXID_genusexpand_taxid2acc.py	Mon Mar 13 13:57:09 2023 +0000
+++ b/TAXID_genusexpand_taxid2acc.py	Mon Mar 13 15:09:54 2023 +0000
@@ -146,7 +146,7 @@
     # ncbi_tax_f = "/nfs/data/db/ete3/taxa.sqlite"
     ncbi_tax_f = os.path.expanduser("~/.etetoolkit/taxa.sqlite")
 if args.taxid_acc_in_f is not None:
-    taxid_acc_in_f = os.path.abspath(args.taxid_acc_f)
+    taxid_acc_in_f = os.path.abspath(args.taxid_acc_in_f)
     b_acc_in_f = True    
 elif(not b_test):
     sys.exit("[Error] You must provide taxid_acc_in_f")