Mercurial > repos > p.lucas > resfinder
changeset 3:a64cdbcf2407 draft
Uploaded
author | p.lucas |
---|---|
date | Thu, 07 Apr 2022 12:25:02 +0000 |
parents | 05f2df368f39 |
children | 6010c8988869 |
files | Resfinder_wrapper.xml |
diffstat | 1 files changed, 1 insertions(+), 1 deletions(-) [+] |
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--- a/Resfinder_wrapper.xml Thu Apr 07 12:20:06 2022 +0000 +++ b/Resfinder_wrapper.xml Thu Apr 07 12:25:02 2022 +0000 @@ -120,7 +120,7 @@ <requirement type="package" version="1.2.11">zlib</requirement> </requirements> <command detect_errors="exit_code"><![CDATA[ - python3 /home/galaxy/resfinder/run_resfinder.py -s "$s" -l "$l" -t "$y" --acquired --point -ifa ${input} -db_res /home/galaxy/resfinder/db_resfinder/ -db_point /home/galaxy/resfinder/db_pointfinder/ -o output && mv ./output/ResFinder_Resistance_gene_seq.fsa $resistance_genes + python3 /home/galaxy/resfinder/run_resfinder.py -s "$s" -l "$l" -t "$t" --acquired --point -ifa ${input} -db_res /home/galaxy/resfinder/db_resfinder/ -db_point /home/galaxy/resfinder/db_pointfinder/ -o output && mv ./output/ResFinder_Resistance_gene_seq.fsa $resistance_genes ]]></command> <inputs> <param format="fasta" name="input" type="data" label="FASTA file : "/>