Mercurial > repos > p.lucas > mafft_add_sequence

changeset 8:6e4e5e8f06fe draft default tip

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Uploaded
author p.lucas
date Thu, 02 May 2019 08:04:09 -0400
parents 836c7a8e563f
children
files mafft.xml
diffstat 1 files changed, 2 insertions(+), 12 deletions(-) [+]
line wrap: on
line diff
--- a/mafft.xml	Thu May 02 07:57:29 2019 -0400
+++ b/mafft.xml	Thu May 02 08:04:09 2019 -0400
@@ -14,25 +14,15 @@
     </version_command>
     <command>
     <![CDATA[
-        mafft --thread \${GALAXY_SLOTS:-1} --add $seqtoadd --reorder $existingalignment $outputFormat > $outputAlignment;
+        mafft --thread \${GALAXY_SLOTS:-1} --add $seqtoadd --reorder $existingalignment > $outputAlignment;
     ]]>
     </command>
     <inputs>
         <param name="seqtoadd" type="data" format="fasta" label="Sequences to add" help="Sequences to add in FASTA format."/>
         <param name="existingalignment" type="data" format="fasta" label="Alignment already done" help="Multi-alignment in FASTA format."/>
-        <param name="outputFormat" type="select" label="Output format" help="Either FASTA or ClustalW or Phylip">
-            <option value="" selected="true">FASTA</option>
-            <option value="--clustalout">ClustalW</option>
-            <option value="--phylipout">Phylip</option>
-        </param>
     </inputs>
     <outputs>
-        <data format="fasta" name="outputAlignment" label="${tool.name} on ${on_string}">
-            <change_format>
-                <when input="outputFormat" value="--clustalout" format="clustal"/>
-                <when input="outputFormat" value="--phylipout" format="phylip"/>
-            </change_format>
-        </data>
+        <data format="fasta" name="outputAlignment" label="${tool.name} on ${on_string}"/>
     </outputs>
     <help>
     <![CDATA[